base_MQ                 Base Summary Function
base_MUH                Base Summary for Males, Unmated Females, and
                        Humans
base_aquatic_geno       Base Aquatic Function for Genotype Summary
base_aquatic_stage      Base Aquatic Function for Erlang-Stage Summary
base_erlang             Base Summary of Erlang Stages for Aquatic Life
                        Stages
base_erlang_F           Base Summary of Erlang Stages for Adult Females
base_gen                Base Summary for Eggs, Larvae, Pupae,
                        Susceptible Females, and Infectious Females
base_gen_FE             Base Summary for Latent Females
base_sum_F              Base Summary of Infection (SEI) Stages for
                        Adult Females
base_summarize_humans   Base Function for Human Summary
batch_migration         Sample Batch Migration Events
batch_migration_stage   Internal function to sample and set up data
                        structure for batch migration
calc_move_rate          Calculate Outbound Movement Rate
equilibrium_SEI_SEIR    Calculate Equilibrium for Mosquito SEI - Human
                        SEIR Model
equilibrium_SEI_SIS     Calculate Equilibrium for Mosquito SEI - Human
                        SIS Model
equilibrium_lifeycle    Calculate Equilibrium for Lifecycle Model
                        (Logistic or Lotka-Volterra)
get_shape               Calculate Erlang shape parameter
make_Q_SEI              Rate Matrix (Q) for Adult Mosquito SEI Dynamics
movement_prob2rate      Convert Stochastic Matrix to Rate Matrix
mu_ts                   Mosquito Death Rates, Comoros Islands
sim_trajectory_CSV      Simulate Trajectory From a SPN Model
sim_trajectory_R        Simulate Trajectory From a SPN Model
sim_trajectory_base_CSV
                        Simulate Trajectory From one SPN Model
sim_trajectory_base_R   Simulate Trajectory From one SPN Model
solve_muAqua            Solve for Constant Aquatic Mortality
split_aggregate_CSV     Split CSV output by Patch and Aggregate by Mate
                        or Dwell-Stage
spn_P_epiSEIR_network   Make Places (P) For a Network (SEI Mosquitoes -
                        SEIR Humans)
spn_P_epiSEIR_node      Make Places (P) For a Node (SEI Mosquitoes -
                        SEIR Humans)
spn_P_epiSIS_network    Make Places (P) For a Network (SEI Mosquitoes -
                        SIS Humans)
spn_P_epiSIS_node       Make Places (P) For a Node (SEI Mosquitoes -
                        SIS Humans)
spn_P_lifecycle_network
                        Make Places (P) For a Network (Mosquitoes only)
spn_P_lifecycle_node    Make Places (P) For a Node (Mosquitoes only)
spn_Post                Make Post Matrix For a Petri Net
spn_Pre                 Make Pre Matrix For a Petri Net
spn_S                   Make stoichiometry Matrix For a Petri Net
spn_T_epiSEIR_network   Make Transitions (T) For a Network (SEI
                        Mosquitoes - SEIR Humans)
spn_T_epiSEIR_node      Make Transitions (T) For a Node (SEI Mosquitoes
                        - SEIR Humans)
spn_T_epiSIS_network    Make Transitions (T) For a Network (SEI
                        Mosquitoes - SIS Humans)
spn_T_epiSIS_node       Make Transitions (T) For a Node (SEI Mosquitoes
                        - SIS Humans)
spn_T_lifecycle_network
                        Make Transitions (T) For a Network (Mosquitoes
                        only)
spn_T_lifecycle_node    Make Transitions (T) For a Node (Mosquitoes
                        only)
spn_hazards             Make Hazards (Lambda) For a MGDrivE2: Node and
                        Network Simulations
step_CLE                Make Chemical Langevin (CLE) Sampler for a SPN
                        model
step_DM                 Make Gillespie's Direct Method (DM) Sampler for
                        a SPN model
step_ODE                Make Mean-field Approximation (ODE) Numerical
                        Integrator for a SPN Model
step_PTS                Make Poisson Time-Step (PTS) Sampler for a SPN
                        Model
summarize_eggs_geno     Summarize Eggs by Genotype
summarize_eggs_stage    Summarize Eggs by Erlang-Stage
summarize_females       Summarize Adult Females (One Node or
                        Metapopulation Network, Lifecycle Model)
summarize_females_epi   Summarize Adult Females (One Node or
                        Metapopulation Network, SEI Mosquitoes)
summarize_humans_epiSEIR
                        Summarize Humans (One Node or Metapopulation
                        Network, SEI Mosquitoes - SEIR Humans)
summarize_humans_epiSIS
                        Summarize Humans (One Node or Metapopulation
                        Network, SEI Mosquitoes - SIS Humans)
summarize_larvae_geno   Summarize Larvae by Genotype
summarize_larvae_stage
                        Summarize Larval by Erlang-Stage
summarize_males         Summarize Adult Males (One Node or
                        Metapopulation Network)
summarize_pupae_geno    Summarize Pupal by Genotype
summarize_pupae_stage   Summarize Pupal by Erlang-Stage
summarize_stats_CSV     Summary Statistics for MGDrivE2
track_hinf              Make tracking matrix for human infection events
