[.seroincidence.by      Extract or replace parts of a
                        'seroincidence.by' object
ab                      kinetics of the antibody (ab) response (power
                        function decay)
as_curve_params         Load antibody decay curve parameter
as_noise_params         Load noise parameters
as_pop_data             Load a cross-sectional antibody survey data set
autoplot.curve_params   graph antibody decay curves by antigen isotype
autoplot.pop_data       Plot distribution of antibodies
autoplot.seroincidence
                        Plot the log-likelihood curve for the incidence
                        rate estimate
autoplot.seroincidence.by
                        Plot 'seroincidence.by' log-likelihoods
autoplot.summary.seroincidence.by
                        Plot method for 'summary.seroincidence.by'
                        objects
check_pop_data          Check the formatting of a cross-sectional
                        antibody survey dataset.
est.incidence           Find the maximum likelihood estimate of the
                        incidence rate parameter
est.incidence.by        Estimate Seroincidence
example_noise_params_pk
                        Small example of noise parameters for typhoid
graph.curve.params      Graph estimated antibody decay curve
graph_loglik            Graph log-likelihood of data
load_curve_params       Load antibody decay curve parameter samples
load_noise_params       Load noise parameters
load_pop_data           Load a cross-sectional antibody survey data set
log_likelihood          Calculate log-likelihood
mk_baseline             generate random sample from baseline
                        distribution
plot_curve_params_one_ab
                        Graph an antibody decay curve model
print.seroincidence     Print Method for 'seroincidence' Object
print.seroincidence.by
                        Print Method for 'seroincidence.by' Object
print.summary.seroincidence.by
                        Print Method for Seroincidence Summary Object
row_longitudinal_parameter
                        extract a row from longitudinal parameter set
sees_pop_data_pk_100    Small example cross-sectional data set
sees_pop_data_pk_100_old_names
                        Small example cross-sectional data set
serocalculator          Estimating Infection Rates from Serological
                        Data
serocalculator_example
                        Get path to an example file
sim.cs                  Simulate a cross-sectional serosurvey with
                        noise
sim.cs.multi            Simulate multiple data sets
simcs.tinf              collect cross-sectional data
simresp.tinf            simulate antibody kinetics of y over a time
                        interval
strata                  Extract strata from an object
strata.seroincidence.by
                        Extract the 'Strata' attribute from an object,
                        if present
summary.pop_data        Summarize cross-sectional antibody survey data
summary.seroincidence   Summarizing fitted seroincidence models
summary.seroincidence.by
                        Summary Method for '"seroincidence.by"' Objects
typhoid_curves_nostrat_100
                        Small example of antibody response curve
                        parameters for typhoid
warn.missing.strata     Warn about missing stratifying variables in a
                        dataset
