BrownianMotionModel     Estimate parameters under a Brownian motion
                        model of evolution
OU_RSS                  Calculates the RSS under a (multivariate)
                        phylogenetic OU model of evolution
OU_phylreg              Performs a phylogenetic regression under a
                        given OU model of evolution
OU_xVz                  Performs a vector matrix vector multiplcation
                        under a (multivariate) phylogenetic OU model of
                        evolution
SummarizeBM             Summarize parameters estimated under a Brownian
                        motion model
SummarizeMVSLOUCH       Summarize parameters estimated under a
                        multivariate OUBM motion model
SummarizeOUCH           Summarize parameters estimated under a
                        (multivariate) OU motion model
drawPhylProcess         Plots the realization of a process evolving on
                        a phylogenetic tree
estimate.evolutionary.model
                        Wrapper function to find best (out of BM, OU,
                        OUOU, OUBM) fitting evolutionary model and
                        estimate its parameters.
fitch.mvsl              Unordered Fitch parsimony reconstruction of
                        discrete character states
generate.model.setups   Generate a list of model setups for the
                        function 'estimate.evolutionary.model'.
mvSLOUCH-package        Multivariate Ornstein-Uhlenbeck type stochastic
                        differential equation models for phylogenetic
                        comparative data.
mvslouchModel           Estimate parameters under a (multivariate) OUBM
                        model of evolution
ouchModel               Estimate parameters under a (multivariate) OU
                        model of evolution
parametric.bootstrap    Parametric bootstrap for confidence intervals
phyltree_paths          Extract path information from a phylogenetic
                        tree
plot.clustered_phylo    Plots a clustered_phylo object.
simulBMProcPhylTree     Simulate data on a phylogeny under a
                        (multivariate) Brownian motion model
simulMVSLOUCHProcPhylTree
                        Simulate data on a phylogeny under a
                        (multivariate) OUBM model
simulOUCHProcPhylTree   Simulate data on a phylogeny under a
                        (multivariate) OU model
simulate_clustered_phylogeny
                        Simulate a phylogenetic tree with a specified
                        number of clades.
