CpGassoc-package        Association Between Methylation and a Phenotype
                        of Interest
cpg.GC                  cpg.GC and methods for output of function
cpg.assoc               Association Analysis Between Methylation Beta
                        Values and Phenotype of Interest
cpg.combine             Combine various objects of class '"cpg"'
cpg.everything          Multi-Task function
cpg.length              Information on miscellaneous other functions
cpg.perm                Perform a Permutation Test of the Association
                        Between Methylation and a Phenotype of Interest
cpg.qc                  Performs quality control on Illumina data.
cpg.work                Does the analysis between the CpG sites and
                        phenotype of interest
design                  Create full and reduced design matrices for the
                        cpg.assoc function.
manhattan               Create a manhattan plot
manhattan.reflect       Create a Reflective Manhattan plot
plot.cpg                Methods for object of class '"cpg"'
plot.cpg.perm           Methods for object of class '"cpg.perm"'.
samplecpg               Sample data from 'CpGassoc'
scatterplot             Plot beta values of individual CpG sites
                        against the independent variable.
