ASMap-package           Additional functions for linkage map
                        construction and manipulation of R/qtl objects.
alignCross              Graphical linkage group identity and alignment.
breakCross              Break linkage groups of an 'qtl' cross object
combineMap              Combine linkage maps from multiple 'qtl' cross
                        objects
fixClones               Consensus genotypes for clonal genotype groups
genClones               Find and report genotype clones
heatMap                 Heat map of the estimated pairwise
                        recombination fractions and LOD linkage between
                        markers.
mapBC                   A constructed linkage map for a backcross
                        barley population
mapBCu                  An unconstructed marker set for a backcross
                        barley population
mapDH                   A constructed linkage map for a doubled haploid
                        wheat population
mapDHf                  An unconstructed marker set for a doubled
                        haploid wheat population
mapF2                   Simulated constructed linkage map for a self
                        pollinated F2 barley population
mergeCross              Merge linkage groups of an 'qtl' cross object
mstmap.cross            Extremely fast linkage map construction for
                        'qtl' objects using MSTmap.
mstmap.data.frame       Extremely fast linkage map construction for
                        data frame objects using MSTmap.
pValue                  P-value graph
pp.init                 Parameter initialization function
profileGen              Profile individual genotype statistics for an
                        R/qtl cross object
profileMark             Profile individual marker and interval
                        statistics for an R/qtl cross object
pullCross               Pull markers from a linkage map.
pushCross               Push markers into an established R/qtl linkage
                        map.
quickEst                Very quick estimation of genetic map distances.
statGen                 Individual genotype statistics for an R/qtl
                        cross object
statMark                Individual marker and interval statistics for
                        an R/qtl cross object
subsetCross             Subset an R/qtl object
