Analysis of Copy Number Signatures
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘CNSigs’ version 0.1.0
Help Pages
| addPloidyData | addPloidyData |
| cancerComps | Components derived from TCGA |
| cancerSigs | Signatures derived from TCGA |
| checkCompOverlap | checkCompOverlap |
| collapsedSigs | Signatures derived from TCGA and collapsed. |
| compareExposures | compareExposures |
| compsExp | Components fitted onto featsExp |
| createSigs | createSigs |
| defaultFeats | Default features to use for copy number signatures |
| determineNumSigs | determineNumSigs |
| detSigNumPipeline | detSigNumPipeline |
| diffCompSigSim | diffCompSigSim |
| extractBP10MB | featureFuncs |
| extractBPChrArm | featureFuncs |
| extractChangepoints | featureFuncs |
| extractCN | featureFuncs |
| extractCNFeats | extractCNFeats |
| extractOscillations | featureFuncs |
| extractSegsize | featureFuncs |
| featsExp | Features from segDataExp |
| findExposures | findExposures |
| fitComponent | fitComponent |
| fitModels | fitModels |
| generateSCM | generateSCM |
| matchSigs | matchSigs |
| plotComp | plotComp |
| plotComps | plotComps |
| plotScm | plotScm |
| plotSegs | plotSegs |
| plotSig | plotSig |
| plotSigExposure | plotSigExposure |
| plotSigExposureMat | plotSigExposureMat |
| plotSigMat | plotSigMat |
| plotSigs | plotSigs |
| postProb | postProb |
| readSegs | readSegs |
| reducePeaks | reducePeaks |
| referenceExp | The result object from Pipeline using segDataExp. |
| remapResults | remapResults |
| runPipeline | runPipeline |
| scmExp | Sample by component matrix for segDataExp |
| segDataExp | Segmentation Data from TCGA BRCA samples |
| segStats | segStats |
| sigExposExp | The generated sigExposure from the segDataExp run |
| sigsExp | The generated Signatures from the segDataExp run |
| sigSim | sigSim |
| smoothSegs | smoothSegs |
| sumOfPosteriors | sumOfPosteriors |
| validateSegData | validateSegData |