RUV2                    Remove Unwanted Variation, 2-step
RUV4                    Remove Unwanted Variation, 4-step
RUVI                    RUV-I
RUVIII                  RUV-III
RUVinv                  Remove Unwanted Variation, inverse method
RUVrinv                 Remove Unwanted Variation, ridged inverse
                        method
collapse.replicates     Collapse Replicates
design.matrix           Design Matrix
getK                    Get K
get_empirical_variances
                        Get empirical variances
google_search           Google Search URL
inputcheck1             Input Check One
invvar                  Inverse Method Variances
projectionplotvariables
                        Projection Plot Variables
randinvvar              (Randomization) Inverse Method Variances
replicate.matrix        Replicate (Mapping) Matrix
residop                 Residual Operator
ruv-package             Detect and Remove Unwanted Variation using
                        Negative Controls
ruv_cancorplot          RUV Canonical Correlation Plot
ruv_ecdf                RUV P-value Empirical CDF Plot
ruv_hist                RUV P-value Histogram Plot
ruv_projectionplot      RUV Projection Plot
ruv_rankplot            RUV Rank Plot
ruv_residuals           RUV Residuals
ruv_rle                 RUV RLE Plot
ruv_scree               RUV Scree Plot
ruv_shiny               RUV Shiny App
ruv_summary             RUV Summary
ruv_svdgridplot         RUV SVD Grid Plot
ruv_svdplot             RUV SVD Plot
ruv_varianceplot        RUV Variance Plot
ruv_volcano             RUV Volcano Plot
sigmashrink             Empirical Bayes shrinkage estimate of sigma^2
variance_adjust         Adjust Estimated Variances
