# Generated by roxygen2: do not edit by hand

export(amr_positives)
export(amr_presence)
export(blast_parser)
export(combine_results)
export(create_grob)
export(create_plotly)
export(define_colours)
export(file_cacher)
export(main)
export(minmax)
export(normalize)
export(order_report)
export(plot_heatmap)
export(read_blast)
export(read_srst2)
export(save_files)
export(subsampler)
export(tree_maker)
export(zetner_score)
import(dplyr)
import(ggplot2)
import(grid)
import(gtable)
importFrom(RColorBrewer,brewer.pal)
importFrom(ape,as.phylo)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,top_n)
importFrom(dplyr,ungroup)
importFrom(gdata,drop.levels)
importFrom(ggdendro,dendro_data)
importFrom(ggdendro,segment)
importFrom(ggdendro,theme_dendro)
importFrom(ggplot2,ggplot)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,layout)
importFrom(grid,unit)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(htmlwidgets,saveWidget)
importFrom(magrittr,"%>%")
importFrom(plotly,as_widget)
importFrom(plotly,config)
importFrom(plotly,ggplotly)
importFrom(plotly,plotly_POST)
importFrom(plyr,mapvalues)
importFrom(reshape2,dcast)
importFrom(stats,as.dendrogram)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stringr,str_extract)
importFrom(stringr,str_split_fixed)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,write.csv)
