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1	36	88
2	56	94
2	48	90
2	32	73
1	44	68
2	39	80
2	34	86
3	41	86
3	50	91
1	39	79
3	62	96
2	52	92
3	37	72
3	50	96
1	41	70
2	55	86
2	41	87
3	56	88
2	39	79
1	52	90
2	46	95
2	44	85		
3	41	90
3	50	115
3	50	84
2	44	79
1	52	94
2	54	97
2	44	86
3	52	111
2	37	87
3	52	98
3	50	87
1	36	68
1	50	88
3	52	82
3	55	111
3	31	75
1	36	94
1	49	95
1	42	80
2	37	95
2	41	68
1	30	94
1	52	88
3	30	84		
1	44	101
2	66	98
3	48	78
2	43	109
2	57	102
1	46	81
3	54	97
3	48	75
2	48	97
1	62	101
3	58	101
2	58	95
2	62	95		
2	46	95
1	34	90
2	66	107
3	52	92
2	55	86
1	55	70
3	57	95
1	56	96
2	55	91
3	56	87
1	54	92
3	55	97
2	46	102
1	52	91
2	32	68
1	44	88
2	46	97
2	59	90
3	46	101
3	46	94
3	54	101
3	66	109
2	56	100
2	59	103
2	57	94
3	52	97
1	48	85
1	44	75
2	41	77
1	50	87
3	48	78
2	48	108
2	59	97
2	46	106
2	54	107
2	55	95
3	54	107
2	59	115
2	44	101
3	54	85
3	52	90
3	66	115
2	44	95
2	57	97
1	39	112
3	60	97
2	45	77
2	41	90
2	50	94
2	39	103
2	43	77
1	48	98
2	37	90
2	58	111
1	46	77
1	43	88
2	44	75
3	34	92
1	30	78
3	50	106
1	39	80
2	37	87
2	55	92
1	39	86
3	36	85
2	43	90
3	50	101
2	55	94
2	43	86
3	60	86
2	48	90
3	30	75
2	43	86
1	39	91
2	52	97
1	39	91
1	39	70
1	56	98
1	59	96
2	46	95
2	57	100
2	50	95
2	54	97
3	50	97
3	60	92
3	59	115
2	41	88
1	48	87
2	59	100
3	60	98
3	56	102
1	51	96

cat1 <- as.numeric(par1) #
cat2<- as.numeric(par2) #
intercept<-as.logical(par3)
x <- t(x)
x1<-as.numeric(x[,cat1])
f1<-as.character(x[,cat2])
xdf<-data.frame(x1,f1)
(V1<-dimnames(y)[[1]][cat1])
(V2<-dimnames(y)[[1]][cat2])
names(xdf)<-c('Response', 'Treatment')
if(intercept == FALSE) (lmxdf<-lm(Response ~ Treatment - 1, data = xdf) ) else (lmxdf<-lm(Response ~ Treatment, data = xdf) )
(aov.xdf<-aov(lmxdf) )
(anova.xdf<-anova(lmxdf) )
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'ANOVA Model', length(lmxdf$coefficients)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, paste(V1, ' ~ ', V2), length(lmxdf$coefficients)+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, 'means',,TRUE)
for(i in 1:length(lmxdf$coefficients)){
a<-table.element(a, round(lmxdf$coefficients[i], digits=3),,FALSE)
}
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable.tab')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'ANOVA Statistics', 5+1,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ',,TRUE)
a<-table.element(a, 'Df',,FALSE)
a<-table.element(a, 'Sum Sq',,FALSE)
a<-table.element(a, 'Mean Sq',,FALSE)
a<-table.element(a, 'F value',,FALSE)
a<-table.element(a, 'Pr(>F)',,FALSE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, V2,,TRUE)
a<-table.element(a, anova.xdf$Df[1],,FALSE)
a<-table.element(a, round(anova.xdf$'Sum Sq'[1], digits=3),,FALSE)
a<-table.element(a, round(anova.xdf$'Mean Sq'[1], digits=3),,FALSE)
a<-table.element(a, round(anova.xdf$'F value'[1], digits=3),,FALSE)
a<-table.element(a, round(anova.xdf$'Pr(>F)'[1], digits=3),,FALSE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, 'Residuals',,TRUE)
a<-table.element(a, anova.xdf$Df[2],,FALSE)
a<-table.element(a, round(anova.xdf$'Sum Sq'[2], digits=3),,FALSE)
a<-table.element(a, round(anova.xdf$'Mean Sq'[2], digits=3),,FALSE)
a<-table.element(a, ' ',,FALSE)
a<-table.element(a, ' ',,FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable1.tab')
bitmap(file='anovaplot.png')
boxplot(Response ~ Treatment, data=xdf, xlab=V2, ylab=V1)
dev.off()
if(intercept==TRUE){
thsd<-TukeyHSD(aov.xdf)
bitmap(file='TukeyHSDPlot.png')
plot(thsd)
dev.off()
}
if(intercept==TRUE){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Tukey Honest Significant Difference Comparisons', 5,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a, ' ', 1, TRUE)
for(i in 1:4){
a<-table.element(a,colnames(thsd[[1]])[i], 1, TRUE)
}
a<-table.row.end(a)
for(i in 1:length(rownames(thsd[[1]]))){
a<-table.row.start(a)
a<-table.element(a,rownames(thsd[[1]])[i], 1, TRUE)
for(j in 1:4){
a<-table.element(a,round(thsd[[1]][i,j], digits=3), 1, FALSE)
}
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
if(intercept==FALSE){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'TukeyHSD Message', 1,TRUE)
a<-table.row.end(a)
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Must Include Intercept to use Tukey Test ', 1, FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
library(car)
lt.lmxdf<-levene.test(lmxdf)
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Levenes Test for Homogeneity of Variance', 4,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,' ', 1, TRUE)
for (i in 1:3){
a<-table.element(a,names(lt.lmxdf)[i], 1, FALSE)
}
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Group', 1, TRUE)
for (i in 1:3){
a<-table.element(a,round(lt.lmxdf[[i]][1], digits=3), 1, FALSE)
}
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,' ', 1, TRUE)
a<-table.element(a,lt.lmxdf[[1]][2], 1, FALSE)
a<-table.element(a,' ', 1, FALSE)
a<-table.element(a,' ', 1, FALSE)
a<-table.row.end(a)
a<-table.end(a)
table.save(a,file='mytable3.tab')