| *Unverified author* | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| R Software Module: rwasp_hierarchicalclustering.wasp (opens new window with default values) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Title produced by software: Hierarchical Clustering | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Date of computation: Thu, 13 Nov 2008 16:32:40 -0700 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Cite this page as follows: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Statistical Computations at FreeStatistics.org, Office for Research Development and Education, URL http://www.freestatistics.org/blog/date/2008/Nov/14/t1226619202nb923bcufcqgnah.htm/, Retrieved Thu, 13 Nov 2008 23:33:24 +0000 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| BibTeX entries for LaTeX users: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
@Manual{KEY,
author = {{YOUR NAME}},
publisher = {Office for Research Development and Education},
title = {Statistical Computations at FreeStatistics.org, URL http://www.freestatistics.org/blog/date/2008/Nov/14/t1226619202nb923bcufcqgnah.htm/},
year = {2008},
}
@Manual{R,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Development Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2008},
note = {{ISBN} 3-900051-07-0},
url = {http://www.R-project.org},
}
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| Family? (F = Feedback message, R = changed R code, M = changed R Module, P = changed Parameters, D = changed Data) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Post a new message | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Original text written by user: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IsPrivate? | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| No (this computation is public) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| User-defined keywords: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Dataseries X: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| » Textbox « » Textfile « » CSV « | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| 4,56 4,51 4,77 5,25 4,41 4,38 4,75 5,25 4,33 4,29 4,91 5,18 4,2 4,08 4,68 5 4,25 4,2 4,71 5 4,25 4,22 4,61 5 4,19 4,15 4,36 5 4,17 4,12 4,3 5 4,21 4,18 4,54 5 4,21 4,19 4,71 5 4,17 4,15 4,57 5 4,16 4,13 4,63 5 4,19 4,17 4,57 5 4,08 4,07 4,33 5 4,06 4,05 4,14 5 3,98 3,97 4,08 4,9 3,82 3,82 3,98 4,75 3,82 3,82 3,89 4,75 3,72 3,72 3,82 4,65 3,56 3,55 3,74 4,5 3,57 3,56 3,67 4,5 3,49 3,47 3,61 4,39 3,32 3,31 3,51 4,25 3,23 3,22 3,36 4,17 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Output produced by software: | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Charts produced by software: |
| Parameters (Session): | par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ; | | Parameters (R input): | par1 = ward ; par2 = ALL ; par3 = FALSE ; par4 = FALSE ; | | R code (references can be found in the software module): | par3 <- as.logical(par3)
| par4 <- as.logical(par4) if (par3 == 'TRUE'){ dum = xlab xlab = ylab ylab = dum } x <- t(y) hc <- hclust(dist(x),method=par1) d <- as.dendrogram(hc) str(d) mysub <- paste('Method: ',par1) bitmap(file='test1.png') if (par4 == 'TRUE'){ plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) } else { plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) } dev.off() if (par2 != 'ALL'){ if (par3 == 'TRUE'){ ylab = 'cluster' } else { xlab = 'cluster' } par2 <- as.numeric(par2) memb <- cutree(hc, k = par2) cent <- NULL for(k in 1:par2){ cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE])) } hc1 <- hclust(dist(cent),method=par1, members = table(memb)) de <- as.dendrogram(hc1) bitmap(file='test2.png') if (par4 == 'TRUE'){ plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub) } else { plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub) } dev.off() str(de) } load(file='createtable') a<-table.start() a<-table.row.start(a) a<-table.element(a,'Summary of Dendrogram',2,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Label',header=TRUE) a<-table.element(a,'Height',header=TRUE) a<-table.row.end(a) num <- length(x[,1])-1 for (i in 1:num) { a<-table.row.start(a) a<-table.element(a,hc$labels[i]) a<-table.element(a,hc$height[i]) a<-table.row.end(a) } a<-table.end(a) table.save(a,file='mytable1.tab') if (par2 != 'ALL'){ a<-table.start() a<-table.row.start(a) a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE) a<-table.row.end(a) a<-table.row.start(a) a<-table.element(a,'Label',header=TRUE) a<-table.element(a,'Height',header=TRUE) a<-table.row.end(a) num <- par2-1 for (i in 1:num) { a<-table.row.start(a) a<-table.element(a,i) a<-table.element(a,hc1$height[i]) a<-table.row.end(a) } a<-table.end(a) table.save(a,file='mytable2.tab') } | Copyright
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