dendrogram
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 1 seconds |
| R Server | 'Gwilym Jenkins' @ 72.249.127.135 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 1.80277563773199 |
| 2 | 1.82482875908947 |
| 3 | 2.54165300542776 |
| 4 | 3.12249899919920 |
| 5 | 3.13368792319849 |
| 6 | 3.16701752442263 |
| 7 | 4.10365690573665 |
| 8 | 4.15932686861707 |
| 9 | 4.25793377120875 |
| 10 | 4.32203655699487 |
| 11 | 4.47101778122163 |
| 12 | 4.52658811910250 |
| 13 | 4.65080638169338 |
| 14 | 4.85695377783234 |
| 15 | 4.85901224530255 |
| 16 | 5.00699510684802 |
| 17 | 6.67083203206317 |
| 18 | 6.7483331275212 |
| 19 | 6.84032162986506 |
| 20 | 6.93757882838096 |
| 21 | 6.98068764521088 |
| 22 | 7.38715100698503 |
| 23 | 7.53790421801711 |
| 24 | 7.68505042273633 |
| 25 | 7.79999999999999 |
| 26 | 8.1363382427232 |
| 27 | 8.18413098624405 |
| 28 | 8.37376856618334 |
| 29 | 9.1706052144883 |
| 30 | 9.43663075467087 |
| 31 | 9.54253635046783 |
| 32 | 9.8 |
| 33 | 9.90807751281752 |
| 34 | 10.0094954917818 |
| 35 | 10.7851750101702 |
| 36 | 10.7907367681730 |
| 37 | 10.8189648303338 |
| 38 | 10.8374351209131 |
| 39 | 11.1162043881893 |
| 40 | 12.5079974416371 |
| 41 | 12.9903810567666 |
| 42 | 13.1468627436358 |
| 43 | 13.2939836016147 |
| 44 | 13.4996296245490 |
| 45 | 13.5136967555144 |
| 46 | 14.0185591271000 |
| 47 | 14.4627106726229 |
| 48 | 14.8327340702920 |
| 49 | 14.9003355666911 |
| 50 | 15.1990131258579 |
| 51 | 15.2865954352171 |
| 52 | 15.2973853975116 |
| 53 | 16.1499226004337 |
| 54 | 16.2932501361760 |
| 55 | 16.7758755360190 |
| 56 | 17.2325273828304 |
| 57 | 17.3942519241271 |
| 58 | 20.0902961650644 |
| 59 | 20.4389334359697 |
| 60 | 20.4406457823621 |
| 61 | 23.7667835434246 |
| 62 | 24.3156328315757 |
| 63 | 24.5521893117498 |
| 64 | 24.914654322306 |
| 65 | 24.9595673039418 |
| 66 | 29.1803015748638 |
| 67 | 32.3191893462692 |
| 68 | 33.0678091200491 |
| 69 | 33.8252863993788 |
| 70 | 37.914113467151 |
| 71 | 40.0282400312579 |
| 72 | 44.0159062158216 |
| 73 | 47.3905053781873 |
| 74 | 51.0383189378334 |
| 75 | 54.7241263064108 |
| 76 | 66.7385196119902 |
| 77 | 77.943890074848 |
| 78 | 104.431987436800 |
| 79 | 145.664099901108 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/05/5bu8xlts671kjg11194297116/1u56o1194297027.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/05/5bu8xlts671kjg11194297116/1u56o1194297027.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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Software written by Ed van Stee & Patrick Wessa
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