Workshop 4 question 2
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 3 seconds |
| R Server | 'Herman Ole Andreas Wold' @ 193.190.124.10:1001 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 2.01494416796098 |
| 2 | 2.91032644217104 |
| 3 | 3.47562943939656 |
| 4 | 4.02243707222376 |
| 5 | 4.1097445176069 |
| 6 | 4.23792402008343 |
| 7 | 4.33704968844028 |
| 8 | 4.80936586256441 |
| 9 | 5.11272921246568 |
| 10 | 5.76367938039583 |
| 11 | 5.80172388174411 |
| 12 | 6.32596452273507 |
| 13 | 7.33038838043221 |
| 14 | 7.69415362466853 |
| 15 | 8.1700673191841 |
| 16 | 8.4279338567296 |
| 17 | 8.73223033589291 |
| 18 | 8.8289297199604 |
| 19 | 9.23038460737146 |
| 20 | 9.65401470891774 |
| 21 | 9.90605875209713 |
| 22 | 9.9373034571759 |
| 23 | 9.96235270609867 |
| 24 | 10.0362830165079 |
| 25 | 10.5952819688765 |
| 26 | 11.1648267830396 |
| 27 | 11.3454852310461 |
| 28 | 11.3525327570547 |
| 29 | 11.3600176056202 |
| 30 | 13.1196573819491 |
| 31 | 13.8344619181306 |
| 32 | 13.8797500466067 |
| 33 | 14.7194578827144 |
| 34 | 14.7777774853826 |
| 35 | 16.9705467748593 |
| 36 | 17.1213413430579 |
| 37 | 18.2058264652671 |
| 38 | 19.0163778401976 |
| 39 | 19.0482803284852 |
| 40 | 19.3977587922622 |
| 41 | 20.8278460040401 |
| 42 | 21.9437245504921 |
| 43 | 24.5576451045647 |
| 44 | 26.33021040626 |
| 45 | 26.6672453218299 |
| 46 | 30.7874722569039 |
| 47 | 31.366758381802 |
| 48 | 33.9921417448659 |
| 49 | 34.5797337343689 |
| 50 | 43.2794755411843 |
| 51 | 44.9382934981700 |
| 52 | 55.290882772132 |
| 53 | 61.6585340373616 |
| 54 | 63.1744337945558 |
| 55 | 81.9184903667206 |
| 56 | 82.5255657715052 |
| 57 | 179.212715218528 |
| 58 | 251.364912787275 |
| 59 | 420.310374894618 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/01/c6w2npfky18jrq51193917500/18hii1193917498.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/01/c6w2npfky18jrq51193917500/18hii1193917498.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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