WS4 Q2 G6 hierarchical clustering
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 1 seconds |
| R Server | 'Gwilym Jenkins' @ 72.249.127.135 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 872.41160010628 |
| 2 | 1327.86369782444 |
| 3 | 1384.1423337215 |
| 4 | 1491.05935495540 |
| 5 | 1764.01587294446 |
| 6 | 1764.26925382720 |
| 7 | 2047.88329745618 |
| 8 | 2084.0686169126 |
| 9 | 2120.66593314459 |
| 10 | 2172.22788859733 |
| 11 | 2187.43137035199 |
| 12 | 2288.13137469998 |
| 13 | 2312.20717064886 |
| 14 | 2383.81710707848 |
| 15 | 2699.09355154652 |
| 16 | 2741.64147911429 |
| 17 | 2747.17928064406 |
| 18 | 2838.75465653515 |
| 19 | 3146.8139442935 |
| 20 | 3313.60921051351 |
| 21 | 3318.87518200179 |
| 22 | 3510.11272075898 |
| 23 | 3788.33785665945 |
| 24 | 3942.9595623084 |
| 25 | 3986.99103672319 |
| 26 | 4028.21641286004 |
| 27 | 5214.69456324304 |
| 28 | 5525.27957063967 |
| 29 | 5898.52100106459 |
| 30 | 6054.68132607862 |
| 31 | 6384.08043022805 |
| 32 | 7004.57705996996 |
| 33 | 7176.1440795992 |
| 34 | 7196.72300425687 |
| 35 | 7733.6502634283 |
| 36 | 7919.87418888597 |
| 37 | 8123.00597069829 |
| 38 | 9243.13866727994 |
| 39 | 10807.9272815957 |
| 40 | 11442.5536747526 |
| 41 | 11571.5460065374 |
| 42 | 11984.2384178138 |
| 43 | 12123.4203448221 |
| 44 | 12537.7157420824 |
| 45 | 14947.2535820025 |
| 46 | 20873.3773218065 |
| 47 | 22377.9477852035 |
| 48 | 27305.7102222397 |
| 49 | 28124.4333129377 |
| 50 | 29138.5555221767 |
| 51 | 39874.6016168609 |
| 52 | 39990.3774530280 |
| 53 | 51577.2707129203 |
| 54 | 88726.6665243049 |
| 55 | 105535.089740650 |
| 56 | 154287.777122290 |
| 57 | 248938.804217822 |
| 58 | 754646.923445161 |
| 59 | 1224956.29922616 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/01/3u5mvrfs9z8l7he1193924634/10gq11193924590.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/01/3u5mvrfs9z8l7he1193924634/10gq11193924590.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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