Workshop 5 - vraag 2
| Summary of compuational transaction | |
| Raw Input | view raw input (R code) |
| Raw Output | view raw output of R engine |
| Computing time | 1 seconds |
| R Server | 'Gwilym Jenkins' @ 72.249.127.135 |
| Summary of Dendrogram | |
| Label | Height |
| 1 | 0 |
| 2 | 0 |
| 3 | 0 |
| 4 | 0 |
| 5 | 0 |
| 6 | 0 |
| 7 | 0.0999999999999943 |
| 8 | 0.0999999999999943 |
| 9 | 0.0999999999999943 |
| 10 | 0.100000000000009 |
| 11 | 0.100000000000009 |
| 12 | 0.133333333333326 |
| 13 | 0.150000000000013 |
| 14 | 0.166666666666676 |
| 15 | 0.200000000000003 |
| 16 | 0.200000000000003 |
| 17 | 0.200000000000003 |
| 18 | 0.299999999999997 |
| 19 | 0.300000000000002 |
| 20 | 0.326666666666657 |
| 21 | 0.333333333333338 |
| 22 | 0.5 |
| 23 | 0.5 |
| 24 | 0.5 |
| 25 | 0.566666666666672 |
| 26 | 0.599999999999994 |
| 27 | 0.600000000000001 |
| 28 | 0.600000000000009 |
| 29 | 0.673333333333334 |
| 30 | 0.68333333333334 |
| 31 | 0.700000000000003 |
| 32 | 0.700000000000003 |
| 33 | 0.899999999999984 |
| 34 | 0.966666666666669 |
| 35 | 1.13333333333333 |
| 36 | 1.20000000000001 |
| 37 | 1.26666666666667 |
| 38 | 1.52619047619048 |
| 39 | 1.65000000000000 |
| 40 | 2.09999999999999 |
| 41 | 2.51666666666668 |
| 42 | 2.89 |
| 43 | 2.95333333333332 |
| 44 | 3.24666666666666 |
| 45 | 3.30000000000002 |
| 46 | 5.43333333333335 |
| 47 | 5.6942857142857 |
| 48 | 6.85757575757576 |
| 49 | 8.67333333333334 |
| 50 | 8.70757575757577 |
| 51 | 9.21 |
| 52 | 10.3604761904762 |
| 53 | 13.4357575757576 |
| 54 | 15.76 |
| 55 | 49.3971177944862 |
| 56 | 81.4593473193473 |
| 57 | 92.9369298245614 |
| 58 | 171.721965811966 |
| 59 | 343.949444444445 |
 |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/01/0f3wcjmo5w65avt1193930152/1irr21193930175.png (open in new window) |
| http://127.0.0.1/wessadotnet/public_html/freestatisticsdotorg/blog/date/2007/Nov/01/0f3wcjmo5w65avt1193930152/1irr21193930175.ps (open in new window) |
par4 <- as.logical(par4)
if (par3 == 'TRUE'){
dum = xlab
xlab = ylab
ylab = dum
}
x <- t(y)
hc <- hclust(dist(x),method=par1)
d <- as.dendrogram(hc)
str(d)
mysub <- paste('Method: ',par1)
bitmap(file='test1.png')
if (par4 == 'TRUE'){
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(d,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
if (par2 != 'ALL'){
if (par3 == 'TRUE'){
ylab = 'cluster'
} else {
xlab = 'cluster'
}
par2 <- as.numeric(par2)
memb <- cutree(hc, k = par2)
cent <- NULL
for(k in 1:par2){
cent <- rbind(cent, colMeans(x[memb == k, , drop = FALSE]))
}
hc1 <- hclust(dist(cent),method=par1, members = table(memb))
de <- as.dendrogram(hc1)
bitmap(file='test2.png')
if (par4 == 'TRUE'){
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8),type='t',center=T, sub=mysub)
} else {
plot(de,main=main,ylab=ylab,xlab=xlab,horiz=par3, nodePar=list(pch = c(1,NA), cex=0.8, lab.cex = 0.8), sub=mysub)
}
dev.off()
str(de)
}
load(file='createtable')
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- length(x[,1])-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,hc$labels[i])
a<-table.element(a,hc$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable1.tab')
if (par2 != 'ALL'){
a<-table.start()
a<-table.row.start(a)
a<-table.element(a,'Summary of Cut Dendrogram',2,TRUE)
a<-table.row.end(a)
a<-table.row.start(a)
a<-table.element(a,'Label',header=TRUE)
a<-table.element(a,'Height',header=TRUE)
a<-table.row.end(a)
num <- par2-1
for (i in 1:num)
{
a<-table.row.start(a)
a<-table.element(a,i)
a<-table.element(a,hc1$height[i])
a<-table.row.end(a)
}
a<-table.end(a)
table.save(a,file='mytable2.tab')
}
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