* using log directory 'd:/Rcompile/CRANpkg/local/4.6/OmopStudyBuilder.Rcheck'
* using R version 4.6.1 (2026-06-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-09-29 19:53:57 UTC
* checking for file 'OmopStudyBuilder/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OmopStudyBuilder' version '0.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OmopStudyBuilder' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s] OK
* checking loading without being on the library search path ... [1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
renv was unable to query available packages from the following repositories:
- # https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib -------------
error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.rds' [error code 22]
error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.gz' [error code 22]
error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES' [error code 22]


* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [2s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [42s] ERROR
  Running 'testthat.R' [42s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(OmopStudyBuilder)
  > 
  > test_check("OmopStudyBuilder")
  
  
  
  
  renv was unable to query available packages from the following repositories:
  - # https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib -------------
  error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.rds' [error code 22]
  error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.gz' [error code 22]
  error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES' [error code 22]
  
  
  [4/27] [5/27] [6/27] [7/27] [8/27] [9/27] [10/27] [11/27] [12/27] [13/27] [14/27] [15/27] [16/27] [17/27] [18/27] [19/27] [20/27] [21/27] [22/27] [23/27] [24/27] [25/27] [26/27] [27/27] renv was unable to query available packages from the following repositories:
  - # https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib -------------
  error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.rds' [error code 22]
  error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES.gz' [error code 22]
  error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/src/contrib/PACKAGES' [error code 22]
  
  
  renv was unable to query available packages from the following repositories:
  - # file:///D:/RCompile/CRANpkg/lib/4.6/renv/repos/bin/windows/contrib/4.6 --------
  error downloading 'file:///D:/RCompile/CRANpkg/lib/4.6/renv/repos/bin/windows/contrib/4.6/PACKAGES.rds' [error code 37]
  error downloading 'file:///D:/RCompile/CRANpkg/lib/4.6/renv/repos/bin/windows/contrib/4.6/PACKAGES.gz' [error code 37]
  error downloading 'file:///D:/RCompile/CRANpkg/lib/4.6/renv/repos/bin/windows/contrib/4.6/PACKAGES' [error code 37]
  
  - # https://bioconductor.statistik.tu-dortmund.de/cran/bin/windows/contrib/4.6 --------
  error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/bin/windows/contrib/4.6/PACKAGES.rds' [error code 22]
  error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/bin/windows/contrib/4.6/PACKAGES.gz' [error code 22]
  error downloading 'https://bioconductor.statistik.tu-dortmund.de/cran/bin/windows/contrib/4.6/PACKAGES' [error code 22]
  
  
  Saving _problems/test-reviewStudy-25.R
  Saving _problems/test-reviewStudy-41.R
  [ FAIL 2 | WARN 2 | SKIP 17 | PASS 87 ]
  
  ══ Skipped tests (17) ══════════════════════════════════════════════════════════
  • Docker not available (2): 'test-dockerWrapper.R:8:3',
    'test-dockerWrapper.R:30:3'
  • Integration test - requires built image (1): 'test-dockerWrapper.R:99:3'
  • Integration test - requires built image and config file (1):
    'test-dockerWrapper.R:107:3'
  • Integration test - requires built image and test script (3):
    'test-dockerWrapper.R:103:3', 'test-dockerWrapper.R:111:3',
    'test-dockerWrapper.R:115:3'
  • Integration test - requires built rstudio image (4):
    'test-dockerWrapper.R:65:3', 'test-dockerWrapper.R:69:3',
    'test-dockerWrapper.R:73:3', 'test-dockerWrapper.R:77:3'
  • Integration test - requires running container (2):
    'test-dockerWrapper.R:85:3', 'test-dockerWrapper.R:89:3'
  • Integration test - requires valid renv project (2):
    'test-dockerWrapper.R:53:3', 'test-dockerWrapper.R:57:3'
  • Manual test - set RUN_MANUAL_TESTS=true to run (requires GITHUB_PAT) (2):
    'test-linkGitHub.R:289:3', 'test-linkGitHub.R:323:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-reviewStudy.R:22:3'): reviewStudy summarises dependencies ──────
  Error in `vapply(downloadable, `[[`, character(1L), "url")`: values must be length 1,
   but FUN(X[[1]]) result is length 0
  Backtrace:
      ▆
   1. └─renv::init(...) at test-reviewStudy.R:22:3
   2.   └─renv::hydrate(...)
   3.     └─renv:::renv_hydrate_resolve_missing(...)
   4.       └─renv:::renv_graph_install(descriptions)
   5.         └─base::vapply(downloadable, `[[`, character(1L), "url")
  ── Error ('test-reviewStudy.R:38:3'): reviewStudy works for both code and dependencies ──
  Error in `vapply(downloadable, `[[`, character(1L), "url")`: values must be length 1,
   but FUN(X[[1]]) result is length 0
  Backtrace:
      ▆
   1. └─renv::init(...) at test-reviewStudy.R:38:3
   2.   └─renv::hydrate(...)
   3.     └─renv:::renv_hydrate_resolve_missing(...)
   4.       └─renv:::renv_graph_install(descriptions)
   5.         └─base::vapply(downloadable, `[[`, character(1L), "url")
  
  [ FAIL 2 | WARN 2 | SKIP 17 | PASS 87 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [7s] OK
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... [5s] OK
* DONE
Status: 1 ERROR, 1 NOTE