Package: DGEobj
Type: Package
Title: Differential Gene Expression (DGE) Analysis Results Data Object
Version: 1.1.2
Description: 
    Provides a flexible container to manage and annotate Differential Gene 
    Expression (DGE) analysis results (Smythe et. al (2015) <doi:10.1093/nar/gkv007>).  
    The DGEobj has data slots for row (gene), col (samples), assays (matrix n-rows 
    by m-samples dimensions) and metadata (not keyed to row, col, or assays).  
    A set of accessory functions to deposit, query and retrieve subsets of a data 
    workflow has been provided.  Attributes are used to capture metadata such as 
    species and gene model, including reproducibility information such that a 3rd 
    party can access a DGEobj history to see how each data object was created or 
    modified.  Since the DGEobj is customizable and extensible it is not limited 
    to RNA-seq analysis types of workflows -- it can accommodate nearly any data 
    analysis workflow that starts from a matrix of assays (rows) by samples (columns).
Authors@R: 
    c(person("John", "Thompson", role = "aut", email = "jrt@thompsonclan.org"),
      person("Connie", "Brett",  role = c("aut", "cre"), email = "connie@aggregate-genius.com"),
      person("Isaac", "Neuhaus", role = "aut", email = "isaac.neuhaus@bms.com"),
      person("Ryan", "Thompson", role = "aut", email = "rct@thompsonclan.org"))
Depends: R (>= 3.5.0)
License: GPL-3
Language: en-US
Encoding: UTF-8
Imports: assertthat, magrittr, stringr, utils
Suggests: biomaRt, conflicted, dplyr, edgeR, GenomicRanges, glue,
        knitr, rmarkdown, testthat
biocViews:
RoxygenNote: 7.1.2
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-05-13 19:51:14 UTC; conniebrett
Author: John Thompson [aut],
  Connie Brett [aut, cre],
  Isaac Neuhaus [aut],
  Ryan Thompson [aut]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Repository: CRAN
Date/Publication: 2022-05-16 07:10:12 UTC
Built: R 4.6.0; ; 2026-06-09 02:42:02 UTC; windows
