# Radix Tree and Trie-Based String Distances

## Documentation for package ‘seqtrie’ version 0.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

align_search | Alignment search
covid_cdr3 | Adaptive COVID TCRB CDR3 data
covid_receptors | Adaptive COVID TCRB nucleotide rearrangements
dist_matrix | Compute distances between all combinations of two sets of sequences
dist_pairwise | Pairwise distance between two sets of sequences
dist_search | Distance search for similar sequences
erase | Erase sequences
generate_cost_matrix | Generate a simple cost matrix
has_sequence | Test sequence membership
insert | Insert sequences
is_valid | Validate trie or forest structure
plot_tree | Plot trie or forest structure
prefix_search | Prefix search
RadixForest | RadixForest
RadixTree | RadixTree
radix_forest | Radix forest
radix_tree | Radix tree
result | Return a fixed-tree self-similarity result
single_gap_search | Single-gap alignment search
size | Count stored sequences
split_search | split_search
StarTree | StarTree
star_tree | Starcode-style fixed tree
to_string | Convert a trie or forest to a string
to_vector | Convert sequences to a character vector