* using log directory 'd:/Rcompile/CRANpkg/local/4.5/rbmiUtils.Rcheck' * using R version 4.5.3 (2026-03-11 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'rbmiUtils/DESCRIPTION' ... OK * this is package 'rbmiUtils' version '0.3.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'rbmiUtils' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s] OK * checking Rd files ... [1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [4s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [19s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [165s] ERROR Running 'spelling.R' [0s] Running 'testthat.R' [165s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(rbmiUtils) > > test_check("rbmiUtils") Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union v All outcome values are complete -- no missing data to impute. i You may not need `data_ice` for `rbmi::draws()`. v All outcome values are complete -- no missing data to impute. i You may not need `data_ice` for `rbmi::draws()`. v All outcome values are complete -- no missing data to impute. i You may not need `data_ice` for `rbmi::draws()`. v All outcome values are complete -- no missing data to impute. i You may not need `data_ice` for `rbmi::draws()`. make cmd is make -f "D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-4.5.3/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="file201483d3311e1.dll" WIN=64 TCLBIN= OBJECTS="file201483d3311e1.o" make would use make[1]: Entering directory '/d/temp/2026_10_07_16_17_17_27527/RtmpY58dbV' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/" -I"D:/temp/2026_10_07_16_17_17_27527/RtmpERuCKL/RLIBS_5d6587e793153/RcppEigen/include/" -I"D:/temp/2026_10_07_16_17_17_27527/RtmpERuCKL/RLIBS_5d6587e793153/RcppEigen/include/unsupported" -I"D:/temp/2026_10_07_16_17_17_27527/RtmpERuCKL/RLIBS_5d6587e793153/BH/include" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -ID:/RCompile/CRANpkg/lib/4.5/RcppParallel/include -I"D:/RCompile/CRANpkg/lib/4.5/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file201483d3311e1.cpp -o file201483d3311e1.o if test "zfile201483d3311e1.o" != "z"; then \ if test -e "file201483d3311e1-win.def"; then \ echo g++ -shared -s -static-libgcc -o file201483d3311e1.dll file201483d3311e1-win.def file201483d3311e1.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file201483d3311e1.dll file201483d3311e1-win.def file201483d3311e1.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ else \ echo EXPORTS > tmp.def; \ nm file201483d3311e1.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \ echo g++ -shared -s -static-libgcc -o file201483d3311e1.dll tmp.def file201483d3311e1.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file201483d3311e1.dll tmp.def file201483d3311e1.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ rm -f tmp.def; \ fi \ fi make[1]: Leaving directory '/d/temp/2026_10_07_16_17_17_27527/RtmpY58dbV' Saving _problems/test-utils-44.R [ FAIL 2 | WARN 16 | SKIP 2 | PASS 1024 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • Stanfit mock requires real Stan compilation - tested via integration (1): 'test-describe.R:273:3' • rbmi::pool() returned empty results for g-computation (df = NA not supported) (1): 'test-integration.R:279:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-utils.R:39:3'): positive test get_imputed_data (from vignettes) ── Error in `compileCode(f, code, language = language, verbose = verbose)`: mespace::model2014844492534_rbmi_MMRM_us_default; BaseRNG = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >]' 22 | return 0.5 * z.p.transpose() * z.inv_e_metric_ * z.p; D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/stan/mcmc/hmc/hamiltonians/dense_e_metric.hpp:21:0: required from here 21 | double T(dense_e_point& z) { D:/RCompile/CRANpkg/lib/4.5/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__m128d'} [-Wignored-attributes] 654 | return internal::first_aligned::alignment),Derived>(m); | ^~~~~~~~~ make[1]: *** [D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf:302: file201483d3311e1.o] Error 1 Backtrace: ▆ 1. ├─rbmi::draws(data = dat, vars = vars, method = method, quiet = TRUE) at test-utils.R:39:3 2. └─rbmi:::draws.bayes(...) 3. └─rbmi:::fit_mcmc(...) 4. └─rbmi:::get_stan_model(covariance = method$covariance, prior_cov = method$prior_cov) 5. └─rstan::stan_model(...) 6. └─rstan:::cxxfunctionplus(...) 7. ├─pkgbuild::with_build_tools(...) 8. │ └─pkgbuild:::withr_with_path(rtools_path(), code) 9. │ └─base::force(code) 10. └─inline::cxxfunction(...) 11. └─inline:::compileCode(f, code, language = language, verbose = verbose) ── Error ('test-utils.R:39:3'): positive test get_imputed_data (from vignettes) ── Error in `sink(type = "output")`: invalid connection Backtrace: ▆ 1. ├─rbmi::draws(data = dat, vars = vars, method = method, quiet = TRUE) at test-utils.R:39:3 2. └─rbmi:::draws.bayes(...) 3. └─rbmi:::fit_mcmc(...) 4. └─rbmi:::get_stan_model(covariance = method$covariance, prior_cov = method$prior_cov) 5. └─rstan::stan_model(...) 6. └─rstan:::cxxfunctionplus(...) 7. └─base::sink(type = "output") [ FAIL 2 | WARN 16 | SKIP 2 | PASS 1024 ] Error: ! Test failures. Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [238s] ERROR Error(s) in re-building vignettes: --- re-building 'analyse2.Rmd' using rmarkdown make cmd is make -f "D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-4.5.3/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="file5fcd052ef3148.dll" WIN=64 TCLBIN= OBJECTS="file5fcd052ef3148.o" make would use make[1]: Entering directory '/d/temp/2026_10_07_16_17_17_27527/RtmpojB5fN' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/" -I"D:/temp/2026_10_07_16_17_17_27527/RtmpERuCKL/RLIBS_5d6587e793153/RcppEigen/include/" -I"D:/temp/2026_10_07_16_17_17_27527/RtmpERuCKL/RLIBS_5d6587e793153/RcppEigen/include/unsupported" -I"D:/temp/2026_10_07_16_17_17_27527/RtmpERuCKL/RLIBS_5d6587e793153/BH/include" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -ID:/RCompile/CRANpkg/lib/4.5/RcppParallel/include -I"D:/RCompile/CRANpkg/lib/4.5/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file5fcd052ef3148.cpp -o file5fcd052ef3148.o if test "zfile5fcd052ef3148.o" != "z"; then \ if test -e "file5fcd052ef3148-win.def"; then \ echo g++ -shared -s -static-libgcc -o file5fcd052ef3148.dll file5fcd052ef3148-win.def file5fcd052ef3148.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file5fcd052ef3148.dll file5fcd052ef3148-win.def file5fcd052ef3148.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ else \ echo EXPORTS > tmp.def; \ nm file5fcd052ef3148.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \ echo g++ -shared -s -static-libgcc -o file5fcd052ef3148.dll tmp.def file5fcd052ef3148.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file5fcd052ef3148.dll tmp.def file5fcd052ef3148.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ rm -f tmp.def; \ fi \ fi make[1]: Leaving directory '/d/temp/2026_10_07_16_17_17_27527/RtmpojB5fN' Quitting from analyse2.Rmd:98-107 [impute] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `sink()`: ! invalid connection --- Backtrace: ▆ 1. ├─rbmi::draws(data = dat, vars = vars, method = method) 2. └─rbmi:::draws.bayes(data = dat, vars = vars, method = method) 3. └─rbmi:::fit_mcmc(...) 4. └─rbmi:::get_stan_model(covariance = method$covariance, prior_cov = method$prior_cov) 5. └─rstan::stan_model(...) 6. └─rstan:::cxxfunctionplus(...) 7. └─base::sink(type = "output") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'analyse2.Rmd' failed with diagnostics: invalid connection --- failed re-building 'analyse2.Rmd' --- re-building 'data-preparation.Rmd' using rmarkdown --- finished re-building 'data-preparation.Rmd' --- re-building 'deriving-endpoints.Rmd' using rmarkdown --- finished re-building 'deriving-endpoints.Rmd' --- re-building 'diagnostics.Rmd' using rmarkdown --- finished re-building 'diagnostics.Rmd' --- re-building 'efficient-storage.Rmd' using rmarkdown --- finished re-building 'efficient-storage.Rmd' --- re-building 'pipeline.Rmd' using rmarkdown make cmd is make -f "D:/RCompile/recent/R-4.5.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-4.5.3/share/make/winshlib.mk" CXX='$(CXX17) $(CXX17STD)' CXXFLAGS='$(CXX17FLAGS)' CXXPICFLAGS='$(CXX17PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX17LDFLAGS)' SHLIB_LD='$(SHLIB_CXX17LD)' SHLIB="file263a461c12cc0.dll" WIN=64 TCLBIN= OBJECTS="file263a461c12cc0.o" make would use make[1]: Entering directory '/d/temp/2026_10_07_16_17_17_27527/RtmpiiBUbZ' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.5.3/include" -DNDEBUG -I"D:/RCompile/CRANpkg/lib/4.5/Rcpp/include/" -I"D:/temp/2026_10_07_16_17_17_27527/RtmpERuCKL/RLIBS_5d6587e793153/RcppEigen/include/" -I"D:/temp/2026_10_07_16_17_17_27527/RtmpERuCKL/RLIBS_5d6587e793153/RcppEigen/include/unsupported" -I"D:/temp/2026_10_07_16_17_17_27527/RtmpERuCKL/RLIBS_5d6587e793153/BH/include" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/src/" -I"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/" -I"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/include/" -DRCPP_PARALLEL_USE_TBB=1 -DTBB_INTERFACE_NEW -ID:/RCompile/CRANpkg/lib/4.5/RcppParallel/include -I"D:/RCompile/CRANpkg/lib/4.5/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include "D:/RCompile/CRANpkg/lib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp" -std=c++1y -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c file263a461c12cc0.cpp -o file263a461c12cc0.o if test "zfile263a461c12cc0.o" != "z"; then \ if test -e "file263a461c12cc0-win.def"; then \ echo g++ -shared -s -static-libgcc -o file263a461c12cc0.dll file263a461c12cc0-win.def file263a461c12cc0.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file263a461c12cc0.dll file263a461c12cc0-win.def file263a461c12cc0.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ else \ echo EXPORTS > tmp.def; \ nm file263a461c12cc0.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \ echo g++ -shared -s -static-libgcc -o file263a461c12cc0.dll tmp.def file263a461c12cc0.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ g++ -shared -s -static-libgcc -o file263a461c12cc0.dll tmp.def file263a461c12cc0.o "D:/RCompile/CRANpkg/lib/4.5/rstan/lib/x64/libStanServices.a" -L"D:/RCompile/CRANpkg/lib/4.5/StanHeaders/libs/x64" -lStanHeaders -L"D:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64" -ltbb -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/libs/x64 -lRcppParallel -LD:/RCompile/CRANpkg/lib/4.5/RcppParallel/lib/x64 -ltbb -ltbbmalloc -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64" -L"d:/rtools45/x86_64-w64-mingw32.static.posix/lib" -L"D:/RCompile/recent/R-4.5.3/bin/x64" -lR ; \ rm -f tmp.def; \ fi \ fi make[1]: Leaving directory '/d/temp/2026_10_07_16_17_17_27527/RtmpiiBUbZ' Quitting from pipeline.Rmd:160-165 [draws] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `sink()`: ! invalid connection --- Backtrace: ▆ 1. ├─rbmi::draws(data = dat, vars = vars, method = method) 2. └─rbmi:::draws.bayes(data = dat, vars = vars, method = method) 3. └─rbmi:::fit_mcmc(...) 4. └─rbmi:::get_stan_model(covariance = method$covariance, prior_cov = method$prior_cov) 5. └─rstan::stan_model(...) 6. └─rstan:::cxxfunctionplus(...) 7. └─base::sink(type = "output") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'pipeline.Rmd' failed with diagnostics: invalid connection --- failed re-building 'pipeline.Rmd' SUMMARY: processing the following files failed: 'analyse2.Rmd' 'pipeline.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [17s] OK * checking HTML version of manual ... [7s] OK * DONE Status: 2 ERRORs