Rendering Graphs as Coherent Spatial Objects in 'ggplot2'
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Documentation for package ‘RGraphSpace’ version 1.5.7
Help Pages
-- A --
| annotation_gspace_image | Annotate a GraphSpace Plot with an Image |
| as.GraphSpace | Convert objects to GraphSpace |
| as.GraphSpace.data.frame | Convert objects to GraphSpace |
| as.GraphSpace.default | Convert objects to GraphSpace |
| as.GraphSpace.DFrame | Convert objects to GraphSpace |
| as.GraphSpace.igraph | Convert objects to GraphSpace |
| as.GraphSpace.matrix | Convert objects to GraphSpace |
| as.GraphSpace.Seurat | Convert objects to GraphSpace |
| as.GraphSpace.SpatialExperiment | Convert objects to GraphSpace |
| as.GraphSpace.tbl_graph | Convert objects to GraphSpace |
| as.igraph.GraphSpace | Accessors for GraphSpace objects |
| as_colorraster | Map numeric values to a color raster |
-- C --
| cropGraphSpace | Crop, rotate, flip, and transpose a GraphSpace |
| cropGraphSpace-method | Crop, rotate, flip, and transpose a GraphSpace |
-- E --
| edgespace_handler | Draw edge elements in a 2D graph layout |
-- F --
| fitGeometry | Normalize or fit node geometry |
| fitGeometry-method | Normalize or fit node geometry |
| flipGraphSpace | Crop, rotate, flip, and transpose a GraphSpace |
| flipGraphSpace-method | Crop, rotate, flip, and transpose a GraphSpace |
-- G --
| GeomEdgeSpace | GeomEdgeSpace: a ggplot2 prototype for GraphSpace-class methods |
| GeomNodeSpace | GeomNodeSpace: a ggplot2 prototype for GraphSpace-class methods |
| geom_edgespace | Draw edge elements in a 2D graph layout |
| geom_graphspace | Convenience wrapper for node and edge geoms |
| geom_nodespace | Draw node elements in a 2D graph layout |
| getGraphSpace | Accessors for fetching slots from a GraphSpace object |
| getGraphSpace-method | Accessors for fetching slots from a GraphSpace object |
| ggplot-GraphSpace | Using ggplot2 with GraphSpace objects |
| ggplot.GraphSpace | Using ggplot2 with GraphSpace objects |
| GlyphArrow | Edge glyph prototypes |
| GlyphArrowBar1 | Edge glyph prototypes |
| GlyphArrowBar2 | Edge glyph prototypes |
| GlyphBar | Edge glyph prototypes |
| GlyphBarredArrow1 | Edge glyph prototypes |
| GlyphBarredArrow2 | Edge glyph prototypes |
| GlyphBlock1 | Edge glyph prototypes |
| GlyphBlock2 | Edge glyph prototypes |
| GlyphChevron1 | Edge glyph prototypes |
| GlyphChevron2 | Edge glyph prototypes |
| GlyphCircle1 | Edge glyph prototypes |
| GlyphCircle2 | Edge glyph prototypes |
| GlyphCross1 | Edge glyph prototypes |
| GlyphCross2 | Edge glyph prototypes |
| GlyphDiamond1 | Edge glyph prototypes |
| GlyphDiamond2 | Edge glyph prototypes |
| GlyphDoubleArrow1 | Edge glyph prototypes |
| GlyphDoubleArrow2 | Edge glyph prototypes |
| GlyphDoubleBar1 | Edge glyph prototypes |
| GlyphDoubleBar2 | Edge glyph prototypes |
| GlyphHarpoon1 | Edge glyph prototypes |
| GlyphHarpoon2 | Edge glyph prototypes |
| GlyphNone | Edge glyph prototypes |
| GlyphNotch1 | Edge glyph prototypes |
| GlyphNotch2 | Edge glyph prototypes |
| GlyphReverseArrow1 | Edge glyph prototypes |
| GlyphReverseArrow2 | Edge glyph prototypes |
| GlyphSquare1 | Edge glyph prototypes |
| GlyphSquare2 | Edge glyph prototypes |
| GlyphStar1 | Edge glyph prototypes |
| GlyphStar2 | Edge glyph prototypes |
| GlyphTriangle1 | Edge glyph prototypes |
| GlyphTriangle2 | Edge glyph prototypes |
| glyph_collection | Edge glyph prototypes |
| glyph_legend | Create a standalone legend for edge glyphs |
| glyph_list | List available edge glyphs |
| glyph_mode | Glyph mode of arrowType codes |
| glyph_proto | Build a new glyph prototype |
| GraphSpace | Create a GraphSpace object |
| GraphSpace-accessors | Accessors for GraphSpace objects |
| GraphSpace-attributes | Attribute utilities for GraphSpace objects |
| GraphSpace-class | GraphSpace: An S4 class for igraph objects |
| GraphSpace-method | Create a GraphSpace object |
| GraphSpace-subscript | Subscript operators for GraphSpace objects |
| gs_add_edges | Add edges to a GraphSpace object |
| gs_add_edges-method | Add edges to a GraphSpace object |
| gs_add_edges<- | Add edges to a GraphSpace object |
| gs_add_edges<--method | Add edges to a GraphSpace object |
| gs_add_features | Manipulate node features in a GraphSpace object |
| gs_add_nodes | Add nodes to a GraphSpace object |
| gs_add_nodes-method | Add nodes to a GraphSpace object |
| gs_add_nodes<- | Add nodes to a GraphSpace object |
| gs_add_nodes<--method | Add nodes to a GraphSpace object |
| gs_compute | Apply igraph functions to the graph inside a GraphSpace |
| gs_ecount | Accessors for GraphSpace objects |
| gs_ecount-method | Accessors for GraphSpace objects |
| gs_edges | Accessors for GraphSpace objects |
| gs_edges-method | Accessors for GraphSpace objects |
| gs_edge_attr | Attribute utilities for GraphSpace objects |
| gs_edge_attr-method | Attribute utilities for GraphSpace objects |
| gs_edge_attr<- | Attribute utilities for GraphSpace objects |
| gs_edge_attr<--method | Attribute utilities for GraphSpace objects |
| gs_fdata | Accessors for GraphSpace objects |
| gs_fdata-method | Accessors for GraphSpace objects |
| gs_fdata<- | Accessors for GraphSpace objects |
| gs_fdata<--method | Accessors for GraphSpace objects |
| gs_features | Accessors for GraphSpace objects |
| gs_features-method | Accessors for GraphSpace objects |
| gs_features-utils | Manipulate node features in a GraphSpace object |
| gs_fetch_features | Manipulate node features in a GraphSpace object |
| gs_geometry | Accessors for GraphSpace objects |
| gs_geometry-method | Accessors for GraphSpace objects |
| gs_geometry<- | Accessors for GraphSpace objects |
| gs_geometry<--method | Accessors for GraphSpace objects |
| gs_graph | Accessors for GraphSpace objects |
| gs_graph-method | Accessors for GraphSpace objects |
| gs_image | Accessors for GraphSpace objects |
| gs_image-method | Accessors for GraphSpace objects |
| gs_image<- | Accessors for GraphSpace objects |
| gs_image<--method | Accessors for GraphSpace objects |
| gs_image_maxpixels | Accessors for GraphSpace objects |
| gs_image_maxpixels-method | Accessors for GraphSpace objects |
| gs_image_maxpixels<- | Accessors for GraphSpace objects |
| gs_image_maxpixels<--method | Accessors for GraphSpace objects |
| gs_image_toy | Toy 'GraphSpace' object |
| gs_names | Accessors for GraphSpace objects |
| gs_names-method | Accessors for GraphSpace objects |
| gs_nfeatures | Accessors for GraphSpace objects |
| gs_nfeatures-method | Accessors for GraphSpace objects |
| gs_nodes | Accessors for GraphSpace objects |
| gs_nodes-method | Accessors for GraphSpace objects |
| gs_scale_factor | Accessors for GraphSpace objects |
| gs_scale_factor-method | Accessors for GraphSpace objects |
| gs_scale_factor<- | Accessors for GraphSpace objects |
| gs_scale_factor<--method | Accessors for GraphSpace objects |
| gs_subset | Filter nodes and edges in a GraphSpace object |
| gs_subset_edges | Filter nodes and edges in a GraphSpace object |
| gs_subset_nodes | Filter nodes and edges in a GraphSpace object |
| gs_vcount | Accessors for GraphSpace objects |
| gs_vcount-method | Accessors for GraphSpace objects |
| gs_vertex_attr | Attribute utilities for GraphSpace objects |
| gs_vertex_attr-method | Attribute utilities for GraphSpace objects |
| gs_vertex_attr<- | Attribute utilities for GraphSpace objects |
| gs_vertex_attr<--method | Attribute utilities for GraphSpace objects |
| gtoy1 | Toy 'igraph' objects |
| gtoy2 | Toy 'igraph' objects |
| gtoys | Toy 'igraph' objects |
-- I --
| inject_nodespace | Dynamic Scale Injection for Edge Clipping |
-- N --
| names | Accessors for GraphSpace objects |
| names-method | Accessors for GraphSpace objects |
| nodespace_handler | Draw node elements in a 2D graph layout |
| normalizeGeometry | Normalize or fit node geometry |
| normalizeGeometry-method | Normalize or fit node geometry |
| normalizeGraphSpace | Normalize node coordinates to graph and image spaces |
| normalizeGraphSpace-method | Normalize node coordinates to graph and image spaces |
-- P --
| plot.GraphSpace | Plot GraphSpace objects |
| plot.gs_glyph | Build a new glyph prototype |
| plot.gs_glyph_list | List available edge glyphs |
| plotGraphSpace | Wrapper function to plot GraphSpace objects in ggplot2 |
| plotGraphSpace-method | Wrapper function to plot GraphSpace objects in ggplot2 |
-- R --
| rotateGraphSpace | Crop, rotate, flip, and transpose a GraphSpace |
| rotateGraphSpace-method | Crop, rotate, flip, and transpose a GraphSpace |
-- S --
| sfshape_ngon | Build regular polygons |
| sfshape_ngons | Build regular polygons |
| sfshape_star | Build star polygons |
| sfshape_stars | Build star polygons |
| StatEdgeSpace | Attribute Processing for GeomEdgeSpace |
| StatNodeSpace | Attribute Processing for GeomNodeSpace |
| summary-method | Summarise a GraphSpace object |
-- T --
| theme_gspace | RGraphSpace ggplot2 themes |
| theme_gspace_coords | RGraphSpace ggplot2 themes |
| theme_gspace_legend | RGraphSpace ggplot2 themes |
| theme_gspace_th0 | RGraphSpace ggplot2 themes |
| theme_gspace_th1 | RGraphSpace ggplot2 themes |
| theme_gspace_th2 | RGraphSpace ggplot2 themes |
| theme_gspace_th3 | RGraphSpace ggplot2 themes |
| transposeGraphSpace | Crop, rotate, flip, and transpose a GraphSpace |
| transposeGraphSpace-method | Crop, rotate, flip, and transpose a GraphSpace |
-- U --
| updateGraphSpace | Update a GraphSpace object |
| updateGraphSpace-method | Update a GraphSpace object |
-- misc --
| $-method | Accessors for GraphSpace objects |
| $<--method | Accessors for GraphSpace objects |
| [-method | Subscript operators for GraphSpace objects |
| [[-method | Subscript operators for GraphSpace objects |
| [[<--method | Accessors for GraphSpace objects |