# Disk-Based Constrained Change-Point Detection

## Documentation for package ‘PeakSegDisk’ version 2024.10.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ChIPreads | Reads aligned to hg19 from two ChIP-seq experiments
coef.PeakSegFPOP_df | coef PeakSegFPOP df
coef.PeakSegFPOP_dir | coef PeakSegFPOP dir
col.name.list | col name list
fread.first | Quickly read first line
fread.last | Quickly read last line
Mono27ac | A small ChIP-seq data set in which peaks can be found using PeakSegFPOP
PeakSegDisk | PeakSeg penalized solver with caching
PeakSegFPOP_df | PeakSeg penalized solver for data.frame
PeakSegFPOP_dir | PeakSeg penalized solver with caching
PeakSegFPOP_file | PeakSegFPOP using disk storage
PeakSegFPOP_vec | PeakSeg penalized solver for integer vector
plot.PeakSegFPOP_df | plot PeakSegFPOP df
plot.PeakSegFPOP_dir | plot PeakSegFPOP dir
sequentialSearch_dir | Compute PeakSeg model with given number of peaks
summary.PeakSegFPOP_dir | summary PeakSegFPOP dir
wc2int | wc2int
writeBedGraph | Write bedGraph file