# Electronic Health Record (EHR) Data Processing and Analysis Tool

## Documentation for package ‘EHR’ version 0.4-11

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

EHR-package | Electronic Health Record (EHR) Data Processing and Analysis Tool
addLastDose | Add Lastdose Data
analysisPheWAS | Statistical Analysis for PheWAS
buildDose | Combine Dose Data
collapseDose | Collapse Dose Data
dataTransformation | Data Transformation
dd | dd
dd.baseline | dd.baseline
dd.baseline.small | dd.baseline.small
dd.small | dd.small
EHR | Electronic Health Record (EHR) Data Processing and Analysis Tool
extractMed | Extract medication information from clinical notes
freqNum | Convert Character Frequency to Numeric
idCrosswalk | Create ID Crosswalk
lam_metadata | Example of Metadata for Lamotrigine Data
lam_mxr_parsed | Example of Lamotrigine Output from 'parseMedExtractR'
Logistf | Firth's penalized-likelihood logistic regression with more decimal places of p-value than 'logistf' function in the R package 'logistf'
makeDose | Make Dose Data
parseCLAMP | Parse CLAMP NLP Output
parseMedEx | Parse MedEx NLP Output
parseMedExtractR | Parse medExtractR NLP Output
parseMedXN | Parse MedXN NLP Output
processLastDose | Process and standardize extracted last dose times
pullFakeId | Pull Fake/Mod ID
pullRealId | Pull Real ID
readTransform | Read and Transform
run_Build_PK_IV | Build-PK-IV Module
run_Build_PK_Oral | Build-PK-Oral Module
run_Demo | Run Demographic Data
run_DrugLevel | Run Drug Level Data
run_Labs | Run Lab Data
run_MedStrI | Run Str Data I
run_MedStrII | Run Structured E-Prescription Data
stdzDose | Standardize Dose Entity
stdzDoseChange | Standardize Dose Change Entity
stdzDoseSchedule | Standardize Dose Schedule Entity
stdzDuration | Standardize Duration Entity
stdzFreq | Standardize Frequency Entity
stdzRoute | Standardize Route Entity
stdzStrength | Standardize Strength Entity
tac_lab | Example of Lab Time Data for Tacrolimus
tac_metadata | Example of Metadata for Tacrolimus Data
tac_mxr_parsed | Example of Tacrolimus Output from 'parseMedExtractR'
zeroOneTable | Make Zero One Contingency Tables