# 'MicroRNA' Set Enrichment Analysis

## Documentation for package ‘MiRSEA’ version 1.1.1

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

MiRSEA-package | MicroRNA Set Enrichment Analysis
Corrp2miRfile | create a pathway-microRNA(miRNA) profile and a p value matrix
EnrichmentScore | Computes the enrichment score
EnrichmentScore2 | Computes the enrichment score faster
envData | The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
example.cls | The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
example.gct | The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
GetExampleData | Get the example data
GetMiRTargetData | Get the data of microRNA(miRNA) and target genes
GetPathwayData | Get the gene sets of pathways
HeatMapPlot | Plot a heatmap
mfile | The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
miRList | The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
MiRSEA | MicroRNA Set Enrichment Analysis
MirSEA | Identify dysregulated pathways based on microRNA (miRNA) set enrichment analysis
MsReport | Produce report for a microRNA (abbreviated miRNA) set
p | The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
p2miR | The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
pathway | The variables in the environment include predefine pathway, target information of miRNAs,an expression profile and a example result of miRNA list
PlotCorrelation | Plot global microRNA(miRNA) correlation profile
PlotHeatMap | Plot a heat map
PlotRunEnrichment | Plot running microRNAs(miRNAs) enrichment score
S2N | calculate signal to noise ratio for microRNAs(miRNAs)