# Modular Crop Growth Simulations

## Documentation for package ‘BioCro’ version 3.3.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

add_csv_row | Define and modify BioCro module test case files
add_time_to_weather_data | Add a time component to input
annualDB | Miscanthus dry biomass data.
annualDB2 | Miscanthus dry biomass data.
case | Run BioCro module test cases
cases_from_csv | Run BioCro module test cases
catm_data | Global annual mean atmopspheric CO2 levels
cmi_soybean_weather_data | Champaign, IL weather data for Soybean-BioCro
cmi_weather_data | Champaign, IL weather data
compare_model_output | Compare new and stored results for a BioCro model test case
crop_model_definitions | Crop model definitions
default_ode_solvers | Default ODE solver settings
dynamical_system | Validating dynamical system inputs
evaluate_module | BioCro module functions
get_all | Get lists of modules, quantities, and solvers
get_all_modules | Get lists of modules, quantities, and solvers
get_all_ode_solvers | Get lists of modules, quantities, and solvers
get_all_quantities | Get lists of modules, quantities, and solvers
get_growing_season_climate | Truncate weather data to one growing season
initialize_csv | Define and modify BioCro module test case files
miscanthus_x_giganteus | Miscanthus model definition
model_testing | The BioCro model testing system
model_test_case | Define BioCro model test cases
modules | BioCro module functions
module_case_files | Define and modify BioCro module test case files
module_creators | Create instances of modules
module_info | BioCro module functions
module_paste | Prepend library name to module names
module_response_curve | BioCro module functions
module_testing | The BioCro module testing system
module_write | Generate a BioCro module header file.
obsBea | Miscanthus assimilation field data
obsBeaC | Complete Miscanthus assimilation field data
obsNaid | Miscanthus assimilation data
partial_application | Convenience Functions for Partial Application
partial_evaluate_module | Convenience Functions for Partial Application
partial_run_biocro | Convenience Functions for Partial Application
quantity_list_from_names | BioCro module functions
run_biocro | Simulate Crop Growth with BioCro
run_model_test_cases | Run BioCro model test cases
soil_parameters | Soil properties
soybean | Soybean-BioCro model definition
soybean_clock | Soybean-BioCro circadian clock model definition
soybean_weather | Champaign, IL weather data for Soybean-BioCro
system_derivatives | Calculate Derivatives for Differential Quantities
test_module | Run BioCro module test cases
test_module_library | Run module test cases for an entire BioCro module library
time | The 'time' variable in BioCro
Time Variable | The 'time' variable in BioCro
update_csv_cases | Define and modify BioCro module test case files
update_stored_model_results | Updated stored result for a BioCro model test case
validate_dynamical_system_inputs | Validating dynamical system inputs
weather | Champaign, IL weather data
willow | Willow model definition