%BC%                    Binary matrix times character vector
apply_decomp            Apply Decomposition to New Data
available_draw          Available Draw Functions
available_supervised    Available Algorithms
available_themes        Print available 'rtemis' themes
calibrate               Calibrate 'Classification' &
                        'ClassificationRes' Models
check_data              Check Data
choose_theme            Select an rtemis theme
class_imbalance         Class Imbalance
classification_metrics
                        Classification Metrics
cluster                 Perform Clustering
col2grayscale           Color to Grayscale
color_adjust            Adjust HSV Color
ddb_collect             Collect a lazy-read duckdb table
ddb_data                Read CSV using DuckDB
decomp                  Perform Data Decomposition
describe                Describe object
df_movecolumn           Move data frame column
df_nunique_perfeat      Unique values per feature
draw_3Dscatter          Interactive 3D Scatter Plots
draw_bar                Interactive Barplots
draw_box                Interactive Boxplots & Violin plots
draw_calibration        Draw calibration plot
draw_confusion          Plot confusion matrix
draw_dist               Draw Distributions using Histograms and Density
                        Plots
draw_fit                True vs. Predicted Plot
draw_graphD3            Plot graph using 'networkD3'
draw_graphjs            Plot network using 'threejs::graphjs'
draw_heatmap            Interactive Heatmaps
draw_leaflet            Plot interactive choropleth map using 'leaflet'
draw_pie                Interactive Pie Chart
draw_protein            Plot an amino acid sequence with annotations
draw_pvals              Barplot p-values using draw_bar
draw_roc                Draw ROC curve
draw_scatter            Interactive Scatter Plots
draw_spectrogram        Interactive Spectrogram
draw_survfit            Draw a survfit object
draw_table              Simple HTML table
draw_ts                 Interactive Timeseries Plots
draw_varimp             Interactive Variable Importance Plot
draw_volcano            Volcano Plot
draw_xt                 Plot timeseries data
dt_describe             Describe data.table
dt_inspect_types        Inspect column types
dt_keybin_reshape       Long to wide key-value reshaping
dt_merge                Merge data.tables
dt_names_by_attr        List column names by attribute
dt_nunique_perfeat      Number of unique values per feature
dt_pctmatch             Get N and percent match of values between two
                        columns of two data.tables
dt_pctmissing           Get percent of missing values from every column
dt_set_autotypes        Set column types automatically
dt_set_clean_all        Clean column names and factor levels
                        _*in-place*_
dt_set_cleanfactorlevels
                        Clean factor levels of data.table _*in-place*_
dt_set_logical2factor   Convert data.table logical columns to factors
dt_set_one_hot          Convert data.table's factor to one-hot encoding
                        _*in-place*_
exc                     Exclude columns by character or numeric vector.
feature_matrix          Convert tabular data to feature matrix
feature_names           Get feature names
features                Get features from tabular data
get_factor_names        Get factor names
get_mode                Get the mode of a factor or integer
get_palette             Get Color Palette
get_varimp              Get variable importance
getnames                Get names by string matching or class
getnamesandtypes        Get data.frame names and types
inc                     Select (include) columns by character or
                        numeric vector.
index_col_by_attr       Index columns by attribute name & value
init_project_dir        Initialize Project Directory
inspect                 Inspect rtemis object
inspect_type            Inspect character and factor vector
is_constant             Check if vector is constant
massGLM                 Mass-univariate GLM Analysis
matchcases              Match cases by covariates
mgetnames               Get names by string matching multiple patterns
names_by_class          List column names by class
numeric_features        Get numeric features from tabular data
one_hot2factor          Convert one-hot encoded matrix to factor
outcome                 Get the outcome as a vector
outcome_name            Get the name of the last column
plot.MassGLM            Plot MassGLM using volcano plot
plot_manhattan          Manhattan plot
plot_roc                Plot ROC curve
plot_true_pred          Plot True vs. Predicted Values
plot_varimp             Plot Variable Importance
preprocess              Preprocess Data
preprocessed            Get preprocessed data from 'Preprocessor'.
present                 Present rtemis object
previewcolor            Preview color
read                    Read tabular data from a variety of formats
read_config             Read an rtemis config from file
regression_metrics      Regression Metrics
resample                Resample data
rnormmat                Random Normal Matrix
roc_curve               ROC curve coordinates
rtemis-package          'rtemis': Advanced Machine Learning and
                        Visualization
rtemis_conditions       rtemis error conditions
rtversion               Get rtemis version and system info
runifmat                Random Uniform Matrix
set_outcome             Move outcome to last column
set_positive_class      Set positive class
setdiffsym              Symmetric Set Difference
setup_CART              Setup CART Hyperparameters
setup_CMeans            Setup CMeansConfig
setup_ClusterConfig     Setup ClusterConfig
setup_DBSCAN            Setup DBSCANConfig
setup_DecomposeConfig   Setup DecomposeConfig
setup_ExecutionConfig   Setup Execution Configuration
setup_GAM               Setup GAM Hyperparameters
setup_GLM               Setup GLM Hyperparameters
setup_GLMNET            Setup GLMNET Hyperparameters
setup_GridSearch        Setup Grid Search Config
setup_HardCL            Setup HardCLConfig
setup_ICA               setup_ICA
setup_Isomap            Setup Isomap config.
setup_Isotonic          Setup Isotonic Hyperparameters
setup_KMeans            Setup KMeansConfig
setup_LightCART         Setup LightCART Hyperparameters
setup_LightGBM          Setup LightGBM Hyperparameters
setup_LightRF           Setup LightRF Hyperparameters
setup_LightRuleFit      Setup LightRuleFit Hyperparameters
setup_LinearSVM         Setup LinearSVM Hyperparameters
setup_NMF               Setup NMF config.
setup_NeuralGas         Setup NeuralGasConfig
setup_PCA               Setup PCA config.
setup_Preprocessor      Setup Preprocessor
setup_RadialSVM         Setup RadialSVM Hyperparameters
setup_Ranger            Setup Ranger Hyperparameters
setup_Resampler         Setup Resampler
setup_SuperConfig       Setup SuperConfig
setup_SuperConfigLive   Setup SuperConfigLive
setup_TabNet            Setup TabNet Hyperparameters
setup_UMAP              Setup UMAP config.
setup_tSNE              Setup tSNE config.
show_color_key          Show rtemis color key
size                    Size of object
table_column_attr       Tabulate column attributes
theme_black             Themes for draw_* functions
train                   Train Supervised Learning Models
uniprot_get             Get protein sequence from UniProt
write_config            Write an rtemis config to a JSON file
xt_example              Example longitudinal dataset
xtdescribe              Describe longitudinal dataset
