Monte Carlo Simulations of Time Changes in Sequences


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Documentation for package ‘MCseqReplic’ version 1.1.0

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ggplotMCcqi Cluster quality measures by MC-sets
MCclustcomp Comparing MC-clusters with cluster of observed data
MCclustqual Cluster quality measures by MC-sets
MCcompgrp Group comparison by MC-sets
MCdisscorr Correlation between observed and MC-simulated distances
MCdisslist List of dissimilarity matrices
MCExtractDist Extract k-th dissimilarity matrix from u.diss
MCmdscorr Correlation between 1st MDS factor of observed and MC-simulated distances
MCnunique Number of unique replicated sequences
MCpj Generate distribution of timing errors
MCratios Ratios of distances on their standard errors
MCseqdistSE Distance standard errors derived from sets of MC-replicated sequences
MCseqReplicate Generate R altered sequence data sets.
MCudist Dissimilarities between unique replicated sequences
print.distMC Print method for distMC objects
print.MCclustQ Cluster quality measures by MC-sets
print.MCratios Print method for MCratios objects
summary.distMC Summary method for distMC objects
summary.MCratios Summary method for MCratios objects