Small Molecule Octet/BLI Kinetics Experiment
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Documentation for package ‘smoke’ version 2.0.1
Help Pages
| smoke-package | Small Molecule Octet/BLI Kinetics Experiment |
| alignLoad | Align BLI traces with loading step |
| alignLoad-method | ~~ Methods for Function 'alignLoad' ~~ |
| alignLoad-methods | ~~ Methods for Function 'alignLoad' ~~ |
| baseline | Align BLI traces with baseline step |
| baseline-method | ~~ Methods for Function 'baseline' ~~ |
| baseline-methods | ~~ Methods for Function 'baseline' ~~ |
| Bli | Constructor of "Bli" class |
| bli | BLI data example |
| Bli-class | Class '"Bli"' |
| doubleBlank | Substract the double-references |
| doubleBlank-method | ~~ Methods for Function 'doubleBlank' ~~ |
| doubleBlank-methods | ~~ Methods for Function 'doubleBlank' ~~ |
| estimate | Estimate initial kinetic parameters |
| estimate-method | ~~ Methods for Function 'estimate' ~~ |
| estimate-methods | ~~ Methods for Function 'estimate' ~~ |
| fitKinetics | Fit binding kinetics |
| fitKinetics-method | ~~ Methods for Function 'fitKinetics' ~~ |
| fitKinetics-methods | ~~ Methods for Function 'fitKinetics' ~~ |
| initialize-method | ~~ Methods for Function 'initialize' ~~ |
| initialize-methods | ~~ Methods for Function 'initialize' ~~ |
| kinetics | Output kinetics model |
| kinetics-method | ~~ Methods for Function 'kinetics' ~~ |
| kinetics-methods | ~~ Methods for Function 'kinetics' ~~ |
| kOff0 | Getter for "Bli" slot of 'kOff0' |
| kOff0-method | ~~ Methods for Function 'kOff0' ~~ |
| kOff0-methods | ~~ Methods for Function 'kOff0' ~~ |
| kOff0<- | Setter for "Bli" slot of 'kOff0' |
| kOff0<--method | ~~ Methods for Function 'kOff0<-' ~~ |
| kOff0<--methods | ~~ Methods for Function 'kOff0<-' ~~ |
| kOn0 | Getter for "Bli" slot of 'kOn0' |
| kOn0-method | ~~ Methods for Function 'kOn0' ~~ |
| kOn0-methods | ~~ Methods for Function 'kOn0' ~~ |
| kOn0<- | Setter for "Bli" slot of 'kOn0' |
| kOn0<--method | ~~ Methods for Function 'kOn0<-' ~~ |
| kOn0<--methods | ~~ Methods for Function 'kOn0<-' ~~ |
| ligand | Getter for "Bli" slot of ligand concentration |
| ligand-method | ~~ Methods for Function 'ligand' ~~ |
| ligand-methods | ~~ Methods for Function 'ligand' ~~ |
| ligand<- | Setter for "Bli" slot of ligand concentration |
| ligand<--method | ~~ Methods for Function 'ligand<-' ~~ |
| ligand<--methods | ~~ Methods for Function 'ligand<-' ~~ |
| nls-class | Class 'nls' |
| plotKinetics | Plot kinetics model fitting |
| plotKinetics-method | ~~ Methods for Function 'plotKinetics' ~~ |
| plotKinetics-methods | ~~ Methods for Function 'plotKinetics' ~~ |
| plotResiduals | Plot residuals from kinetics model fitting |
| plotResiduals-method | ~~ Methods for Function 'plotResiduals' ~~ |
| plotResiduals-methods | ~~ Methods for Function 'plotResiduals' ~~ |
| plotTraces | Plot BLI traces |
| plotTraces-method | ~~ Methods for Function 'plotTraces' ~~ |
| plotTraces-methods | ~~ Methods for Function 'plotTraces' ~~ |
| show-method | ~~ Methods for Function 'show' ~~ |
| show-methods | ~~ Methods for Function 'show' ~~ |
| smoke | Small Molecule Octet/BLI Kinetics Experiment |
| status | Getter for data processing 'status' |
| status-method | ~~ Methods for Function 'status' ~~ |
| status-methods | ~~ Methods for Function 'status' ~~ |
| tExp | Getter for BLI times 'tExp' |
| tExp-method | ~~ Methods for Function 'tExp' ~~ |
| tExp-methods | ~~ Methods for Function 'tExp' ~~ |
| tExp<- | Setter for BLI times 'tExp' |
| tExp<--method | ~~ Methods for Function 'tExp<-' ~~ |
| tExp<--methods | ~~ Methods for Function 'tExp<-' ~~ |
| traces | Getter of BLI 'traces' |
| traces-method | ~~ Methods for Function 'traces' ~~ |
| traces-methods | ~~ Methods for Function 'traces' ~~ |
| traces<- | Setter of BLI 'traces' |
| traces<--method | ~~ Methods for Function 'traces<-' ~~ |
| traces<--methods | ~~ Methods for Function 'traces<-' ~~ |