# Modern Network Visualization

## Documentation for package ‘cograph’ version 1.5.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

aes-edges | Edge Aesthetics
aes-nodes | Node Aesthetics
as_cograph | Convert to Cograph Network
cograph | Create a Network Visualization
from_qgraph | Convert a qgraph object to cograph parameters
from_tna | Convert a tna object to cograph parameters
get_edges | Get Edges from Cograph Network
get_labels | Get Labels from Cograph Network
get_layout | Get a Registered Layout
get_nodes | Get Nodes from Cograph Network
get_shape | Get a Registered Shape
get_theme | Get a Registered Theme
layout-groups | Group-based Layout
layout-oval | Oval/Ellipse Layout
layout-spring | Fruchterman-Reingold Spring Layout
layout_circle | Circular Layout
layout_groups | Group-based Layout
layout_oval | Oval Layout
layout_spring | Fruchterman-Reingold Spring Layout
list_layouts | List Available Layouts
list_palettes | List Available Color Palettes
list_shapes | List Available Shapes
list_svg_shapes | List Registered SVG Shapes
list_themes | List Available Themes
mlna | Multilevel Network Visualization
mtna | Multi-Cluster TNA Network Plot
n_edges | Get Number of Edges
n_nodes | Get Number of Nodes
output-save | Output and Saving
palettes | Color Palettes
palette_blues | Blues Palette
palette_colorblind | Colorblind-friendly Palette
palette_diverging | Diverging Palette
palette_pastel | Pastel Palette
palette_rainbow | Rainbow Palette
palette_reds | Reds Palette
palette_viridis | Viridis Palette
plot_htna | Plot Heterogeneous TNA Network (Multi-Group Layout)
plot_mlna | Multilevel Network Visualization
plot_mtna | Multi-Cluster TNA Network Plot
plot_tna | TNA-Style Network Plot (qgraph Compatible)
register_layout | Register a Custom Layout
register_shape | Register a Custom Shape
register_svg_shape | Register Custom SVG Shape
register_theme | Register a Custom Theme
set_edges | Set Edges in Cograph Network
set_layout | Set Layout in Cograph Network
set_nodes | Set Nodes in Cograph Network
sn_edges | Set Edge Aesthetics
sn_ggplot | Convert Network to ggplot2
sn_layout | Apply Layout to Network
sn_nodes | Set Node Aesthetics
sn_palette | Apply Color Palette to Network
sn_render | Plot Cograph Network
sn_save | Save Network Visualization
sn_save_ggplot | Save as ggplot2
sn_theme | Apply Theme to Network
soplot | Plot Cograph Network
splot | Base R Graphics Network Plotting
theme_cograph_classic | Classic Theme
theme_cograph_colorblind | Colorblind-friendly Theme
theme_cograph_dark | Dark Theme
theme_cograph_gray | Grayscale Theme
theme_cograph_minimal | Minimal Theme
theme_cograph_nature | Nature Theme
theme_cograph_viridis | Viridis Theme
tplot | TNA-Style Network Plot (qgraph Compatible)
unregister_svg_shape | Unregister SVG Shape