Multiplex Network Analysis

Documentation for package ‘PLEXI’ version 1.0.0

as_igraph	Convert plexi graph data to igraph
as_plexi_graph	Convert adjacency matrix to plexi graph data
distance	Function to calculate distance between two vectors
ednn	Encoder decoder neural network (EDNN) function
ednn_io_prepare	Preparing the input and output of the EDNN for a multiplex graph
example_data	Example Data
network_gen	Multiplex Network Generation
plexi_distance_test1_isn	Test the extremeness of embedding distances of local neighbors.
plexi_distance_test_isn	Test the embedding distances of local neighbors change between the two conditions for ISNs.
plexi_embedding	Calculate the embedding space for a multiplex network
plexi_embedding_2layer	Calculate the embedding space for a two layer multiplex network
plexi_node_detection_2layer	Detecting the nodes whose local neighbors change bweteen the two conditions.
plexi_node_distance	Detecting the nodes whose local neighbors change between the two conditions for ISNs.
p_val_count	Calculate p.value for x given set of null values using counts
p_val_norm	Calculate p.value for x given set of null values using a Gaussian null pdf
p_val_rank	Calculate p.value for x given a set of null values using ranks
Rank	Ranking a vector
rep_random_walk	Repetitive Fixed-length (weighted) random walk algorithm
subgraph_difference_plot	Visualization of a difference subgroup using a circular graph
subgraph_plot	Visualization of a subgroup using a circular graph
weightd_random_walk	Weighted Random Walk algorithm