Computation of 3D Tree Imbalance
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Documentation for package ‘treeDbalance’ version 1.0.1
Help Pages
| addImbalPhylo3D | Plot a phylo3D object |
| addPhylo3D | Plot a phylo3D object |
| all3DImbalIndices | Calculation of integral-based distance- and angle-based 3D imbalance indices |
| alpha_Index | Calculation of integral-based distance- and angle-based 3D imbalance indices |
| angle3dVec | Calculation of the centroid angles |
| A_Index | Calculation of integral-based distance- and angle-based 3D imbalance indices |
| combined3DIndex | Calculation of combined 3D imbalance indices |
| cross3d_prod | Calculation of the centroid distances |
| dist3dToLine | Calculation of the centroid distances |
| example3Dtrees | Examples of rooted 3D trees |
| extendPhylo | Useful extensions to the phylo format |
| getAncs | Useful extensions to the phylo format |
| getChildren | Useful extensions to the phylo format |
| getDescendants | Useful extensions to the phylo format |
| getDescs | Useful extensions to the phylo format |
| getDistFromLeaf | Useful extensions to the phylo format |
| getDistFromRoot | Useful extensions to the phylo format |
| getIncEdgeLens | Useful extensions to the phylo format |
| getIncEdgeWeights | Useful extensions to the phylo format |
| getLeaves | Useful extensions to the phylo format |
| getNodeDepths | Useful extensions to the phylo format |
| getNodesAtDepth | Useful extensions to the phylo format |
| getSubtrCentr | Useful extensions to the phylo format |
| imbalInt_e | Calculation of integral-based distance- and angle-based 3D imbalance indices |
| imbalProfile | Calculation of 3D imbalance profiles |
| imbalProfile_e | Calculation of integral-based distance- and angle-based 3D imbalance indices |
| imbalSubdiv_A | Calculation of the centroid angles |
| imbalSubdiv_alpha | Calculation of the centroid angles |
| imbalSubdiv_M | Calculation of the centroid distances |
| imbalSubdiv_mu | Calculation of the centroid distances |
| makePhylo3DBalanced | Turn a rooted 3D tree into one of its balanced versions |
| mu_Index | Calculation of integral-based distance- and angle-based 3D imbalance indices |
| M_Index | Calculation of integral-based distance- and angle-based 3D imbalance indices |
| plotImbalPhylo3D | Plot a phylo3D object |
| plotPhylo3D | Plot a phylo3D object |
| rotate3dVec | Turn a rooted 3D tree into one of its balanced versions |