* using log directory 'd:/Rcompile/CRANpkg/local/4.5/jointCompRisk.Rcheck'
* using R version 4.5.3 (2026-03-11 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'jointCompRisk/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'jointCompRisk' version '0.1.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'jointCompRisk' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [3s] OK
* checking whether the package can be loaded with stated dependencies ... [3s] OK
* checking whether the package can be unloaded cleanly ... [3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [3s] OK
* checking whether the namespace can be unloaded cleanly ... [3s] OK
* checking loading without being on the library search path ... [3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... [0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [4s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [7s] ERROR
  Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(jointCompRisk)
  > 
  > test_check("jointCompRisk")
  Saving _problems/test-basic-32.R
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-basic.R:32:3'): do_cif_analysis returns formatted summaries ────
  Error in `survfit.formula(Surv(etime, estatus) ~ 1, etype = etype2, data = data.w)`: the etype argument is no longer supported, use a factor as the status variable
  Backtrace:
      ▆
   1. └─jointCompRisk::do_cif_analysis(prepped, tau = 15) at test-basic.R:32:3
   2.   └─jointCompRisk:::table1_cif(Treatment, Control, tau, 0, 1, 0)
   3.     └─jointCompRisk:::auc.var.joint(data1, tau, a, b, c)
   4.       ├─survival::survfit(Surv(etime, estatus) ~ 1, etype = etype2, data = data.w)
   5.       └─survival::survfit.formula(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [9s] ERROR
Error(s) in re-building vignettes:
--- re-building 'Example_analysis.Rmd' using rmarkdown

Quitting from Example_analysis.Rmd:24-42 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `survfit.formula()`:
! the etype argument is no longer supported, use a factor as the status variable
---
Backtrace:
    ▆
 1. └─jointCompRisk::do_cif_analysis(mydata_std, tau = 15)
 2.   └─jointCompRisk:::table1_cif(Treatment, Control, tau, 0, 1, 0)
 3.     └─jointCompRisk:::auc.var.joint(data1, tau, a, b, c)
 4.       ├─survival::survfit(Surv(etime, estatus) ~ 1, etype = etype2, data = data.w)
 5.       └─survival::survfit.formula(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Example_analysis.Rmd' failed with diagnostics:
the etype argument is no longer supported, use a factor as the status variable
--- failed re-building 'Example_analysis.Rmd'

--- re-building 'Vignette.Rmd' using rmarkdown

Quitting from Vignette.Rmd:159-169 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `survfit.formula()`:
! the etype argument is no longer supported, use a factor as the status variable
---
Backtrace:
    ▆
 1. └─jointCompRisk::do_cif_analysis(mydata_std, tau = 15)
 2.   └─jointCompRisk:::table1_cif(Treatment, Control, tau, 0, 1, 0)
 3.     └─jointCompRisk:::auc.var.joint(data1, tau, a, b, c)
 4.       ├─survival::survfit(Surv(etime, estatus) ~ 1, etype = etype2, data = data.w)
 5.       └─survival::survfit.formula(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Vignette.Rmd' failed with diagnostics:
the etype argument is no longer supported, use a factor as the status variable
--- failed re-building 'Vignette.Rmd'

SUMMARY: processing the following files failed:
  'Example_analysis.Rmd' 'Vignette.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [16s] OK
* checking HTML version of manual ... [2s] OK
* DONE
Status: 2 ERRORs