Predicting Species Accumulation Curves
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Documentation for package ‘preseqR’ version 4.0.0
Help Pages
| preseqR-package | Predicting r-species accumulation curves |
| bbc.rSAC | BBC estimator |
| cs.rSAC | CS estimator |
| Dickens | Dickens' vocabulary |
| ds.rSAC | RFA estimator |
| ds.rSAC.bootstrap | RFA estimator with bootstrap |
| fisher.alpha | Parameter alpha in the logseries estimator |
| fisher.rSAC | Logseries estimator |
| FisherButterfly | Fisher's butterfly data |
| kmer.frac.curve | Fraction of k-mers observed at least r times |
| kmer.frac.curve.bootstrap | Fraction of k-mers observed at least r times with bootstrap |
| preseqR.interpolate.rSAC | Interpolation |
| preseqR.nonreplace.sampling | Sampling |
| preseqR.optimal.sequencing | Optimal amount of sequencing for scWGS |
| preseqR.rSAC | Best practice for r-SAC - a fast version |
| preseqR.rSAC.bootstrap | Best practice for r-SAC |
| preseqR.rSAC.sequencing.rmdup | Predicting r-SAC in WES/WGS |
| preseqR.sample.cov | Predicting generalized sample coverage |
| preseqR.sample.cov.bootstrap | Predicting generalized sample coverage with bootstrap |
| preseqR.simu.hist | Simulation |
| preseqR.ztnb.em | Fitting a zero-truncated negative binomial distribution |
| Shakespeare | Shakespeare's word type frequencies |
| SRR061157_k31 | k-mer counts of a metagenomic data |
| SRR1301329_1M_base | Coverage histogram of a WES data |
| SRR1301329_1M_read | Read counts of a WES data |
| SRR1301329_base | Coverage histogram of a WES data |
| SRR1301329_read | Read counts of a WES data |
| SRR611492 | Coverage histogram of a scWGS data |
| SRR611492_5M | Coverage histogram of a scWGS data |
| Social network | |
| WillButterfly | Fisher's butterfly data |
| ztnb.rSAC | ZTNB estimator |
| ztp.rSAC | ZTP estimator |