Package: autoGO
Title: Auto-GO: Reproducible, Robust and High Quality Ontology
        Enrichment Visualizations
Version: 1.0.3
Authors@R: c(
    person('Isabella', 'Grassucci', , 'isabella.grassucci@gmail.com', role = 'aut',
           comment = c(ORCID = '0000-0002-2484-8570')),
    person('Eleonora', 'Sperandio', , 'eleonora.sperandio@ifo.it', role = 'aut',
           comment = c(ORCID = '0000-0002-8572-6788')),
    person('Fabio', 'Ticconi', , 'fabio.ticconi@gmail.com', role = 'cre',
           comment = c(ORCID = '0000-0001-8905-6657')),
    person('Alice', 'Massacci', , 'alice.massacci@ifo.it', role = 'aut',
           comment = c(ORCID = '0000-0001-7780-809X')),
    person('Lorenzo', 'D\'Ambrosio', , 'lorenzo.dambrosio@ifo.it', role = 'aut',
           comment = c(ORCID = '0000-0002-9656-7436')),
    person('Matteo', 'Pallocca', , 'matteo.pallocca@ifo.it', role = 'aut',
           comment = c(ORCID = '0000-0002-7756-3579')))
Description: Auto-GO is a framework that enables automated, high quality Gene Ontology enrichment analysis visualizations. It also features a handy wrapper for Differential Expression analysis around the 'DESeq2' package described in Love et al. (2014) <doi:10.1186/s13059-014-0550-8>. The whole framework is structured in different, independent functions, in order to let the user decide which steps of the analysis to perform and which plot to produce.
License: MIT + file LICENSE
Encoding: UTF-8
BugReports: https://github.com/mpallocc/auto-go/issues
RoxygenNote: 7.3.2
LazyData: true
Depends: R (>= 3.5.0), readr (>= 2.1.2), dplyr (>= 1.1.0), enrichR (>=
        3.4)
biocViews:
Imports: ape, ComplexHeatmap, DESeq2, dichromat, ggplot2, ggrepel,
        grDevices, GSVA, msigdbr, openxlsx, purrr, RColorBrewer,
        reshape2, stats, stringr, SummarizedExperiment, textshape,
        tibble, tidyr, tidyselect, utils
Suggests: knitr, rlang, rmarkdown
VignetteBuilder: knitr
Config/Authors@R: yes
NeedsCompilation: no
Packaged: 2025-08-05 08:57:59 UTC; fabio
Author: Isabella Grassucci [aut] (ORCID:
    <https://orcid.org/0000-0002-2484-8570>),
  Eleonora Sperandio [aut] (ORCID:
    <https://orcid.org/0000-0002-8572-6788>),
  Fabio Ticconi [cre] (ORCID: <https://orcid.org/0000-0001-8905-6657>),
  Alice Massacci [aut] (ORCID: <https://orcid.org/0000-0001-7780-809X>),
  Lorenzo D'Ambrosio [aut] (ORCID:
    <https://orcid.org/0000-0002-9656-7436>),
  Matteo Pallocca [aut] (ORCID: <https://orcid.org/0000-0002-7756-3579>)
Maintainer: Fabio Ticconi <fabio.ticconi@gmail.com>
Repository: CRAN
Date/Publication: 2025-08-19 23:10:18 UTC
Built: R 4.4.3; ; 2025-10-21 14:26:40 UTC; windows
