Family Age-at-Onset Data Simulation and Penetrance Estimation

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Documentation for package ‘FamEvent’ version 3.2

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FamEvent-package Family age-at-onset data simulation and penetrance estimation
carrierprob Compute mutation carrier probabilities for individuals with missing gentoypes
fampower Simulation-based power calculation for genetic effect
LSfam Ontario Lynch Syndrom families
penetrance Penetrance function and confidence intervals
penetrance_cmp Estimating Penetrances for competing risk models and confidence intervals
penmodel Fit a penetrance model
penmodelEM EM algorithm for estimating the penetrance model with missing genotypes
penmodel_cmp Fit a penetrance model for competing risks data
penplot Plot penetrance functions
penplot_cmp Plot penetrance functions from competing risk models
plot.penmodel Plot method for 'penmodel'
plot.penmodel_cmp Plot method for 'penmodel_cmp'
plot.simfam Plot method for 'simfam' or Plot pedigrees
plot.simfam2 Plot method for 'simfam2' or Plot pedigrees
plot.simfam_cmp Plot method for 'simfam_cmp' or Plot pedigrees
plot.simfam_tvc Plot method for 'simfam_tvc' or Plot pedigrees
print.penmodel Print method for 'penmodel'.
print.penmodel_cmp Print method for 'penmodel_cmp'.
print.summary.penmodel Print method for 'summary.penmodel' of a fitted penetrance model.
print.summary.penmodel_cmp Print method for 'summary.penmodel_cmp' of a fitted competing risks penetrance model.
simfam Generate familial time-to-event data
simfam2 Generate familial time-to-event data with Kinship or IBD matrices.
simfam_cmp Generate familial competing risks data
simfam_tvc Generate familial time-to-event data with a time-varying covariate
summary.penmodel Summary method for class 'penmodel'
summary.penmodel_cmp Summary method for class 'penmodel_cmp'
summary.simfam Summary method for 'simfam'
summary.simfam2 Summary method for 'simfam2'
summary.simfam_cmp Summary method for 'simfam_cmp'
summary.simfam_tvc Summary method for 'simfam_tvc'