Species Identification using DNA Barcodes
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Documentation for package ‘BarcodingR’ version 1.0-3
Help Pages
| barcodes.eval | Barcodes Evaluation |
| barcoding.gap | Barcoding Gap Calculation |
| barcoding.spe.identify | Species Identification using Protein-coding Barcodes |
| barcoding.spe.identify2 | Species Identification Based on Fuzzy-set Method and kmer |
| bbsik | Bp Barcoding Species Identify using Kmer |
| char2NumVector | Character to Integer Vector |
| compare2delimitations | Comparision between two Delimitations |
| consensus.identify | Consensus Identification |
| digitize.DNA | Digitize DNAbin |
| DNAbin2kmerFreqMatrix | Calculation of Kmer Frequency Matrix from DNAbin for Both Reference and Query Sequences |
| FMF | Fuzzy Membership Function Value |
| FMFtheta12 | Calculate Intraspecific and Interspecific Variation |
| NAMES | Extracts Lables of Samples |
| optimize.kmer | Optimize kmer Length |
| pineMothCOI | pine Moth COI |
| pineMothITS1 | pine Moth ITS1 |
| pineMothITS2 | pine Moth ITS2 |
| sample.ref | Sample Random Datasets from References (DNAbin) |
| save.ids | Save Identifications |
| summarize.ref | Summarize Reference Data |
| TDR2 | TDR2 Species Membership Value |
| TibetanMoth | Tibetan Moth |