Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing

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Documentation for package ‘selfingTree’ version 0.2

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selfingTree-package Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing
buildSelfingTree Builds the probability tree
evalProb Evaluates the genotype probability
extractProbs Extracts conditional genotype probabilities
F4 Genotypes of one million simulated F4 lines.
genSubtree.2M Generates a sub-tree
genSubtree.3M Generates a sub-tree
getTargets Obtain all possible genotypes that match a certain target configuration
haploProb.2M Probability of observing the target haplotype given the parental genotype.
haploProb.3M Probability of observing the target haplotype given the parental genotype.
map Genetic map of the three markers in the F4 data set.
nodeProbabilities Multiplies conditional probabilities along all branches of the tree
selfingTree Genotype Probabilities in Intermediate Generations of Inbreeding Through Selfing