Database Storage of Genotype Probabilities for QTL Mapping

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Documentation for package ‘qtl2fst’ version 0.30

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

calc_genoprob_fst	Calculate conditional genotype probabilities and write to fst database
cbind.fst_genoprob	Join genotype probabilities for different chromosomes
fst2calc_genoprob	Extract genotype probabilities from fst database
fst_extract	Extract genotype probabilities from fst database
fst_files	List files used in fst_genoprob object
fst_genoprob	Store genotype probabilities in fst database
fst_genoprob_restore	Restore fst_genoprob object to original dimensions.
fst_path	Path used in fst_genoprob object
fst_restore	Restore fst_genoprob object to original dimensions.
genoprob_to_alleleprob_fst	Convert genotype probabilities to allele probabilities and write to fst database
rbind.fst_genoprob	Join genotype probabilities for different individuals
replace_path	Replace the path used in fst_genoprob object
subset.fst_genoprob	Subsetting genotype probabilities
subset_fst_genoprob	Subsetting genotype probabilities
summary.fst_genoprob	Summary of an fst_genoprob object