Age-Structured Spatio-Temporal Models for Infectious Disease Counts

---

Documentation for package ‘hhh4contacts’ version 0.13.4

• DESCRIPTION file.
• Code demos. Use demo() to run them.
• Package NEWS.

Help Pages

adaptP	Adapt a Transition Matrix to a Specific Stationary Distribution
addGroups2WFUN	Group-Dependent Parametric Weights
aggregateC	Aggregate a Contact Matrix
aggregateCountsArray	Aggregate an Array of Counts wrt One Dimension (Stratum)
C2pop	Adapt a Contact Matrix to Population Fractions
contactmatrix	POLYMOD Contact Matrices for Germany
contactmatrix_mossong	POLYMOD Contact Matrices for Germany
contactmatrix_mossong_physical	POLYMOD Contact Matrices for Germany
contactmatrix_POLYMOD	POLYMOD Contact Matrices for Germany
contactmatrix_POLYMOD_physical	POLYMOD Contact Matrices for Germany
contactmatrix_wallinga	POLYMOD Contact Matrices for Germany
contactmatrix_wallinga_physical	POLYMOD Contact Matrices for Germany
counts	Create '"sts"' Objects from the Berlin Norovirus Data
dssAggregate	Compute the DSS on Aggregated Predictions and Observations
expandC	Expand the Contact Matrix over Regions
fitC	Estimate the Power of the Contact Matrix in a '"hhh4"' Model
make_powerC	Exponentiate a Matrix via Eigendecomposition
map	Create '"sts"' Objects from the Berlin Norovirus Data
noroBE	Create '"sts"' Objects from the Berlin Norovirus Data
plotC	Generate an Image of a Contact Matrix
plotHHH4_fitted_groups	Plot Mean Components of a 'hhh4' Fit by Group
plotHHH4_maps_groups	Plot Mean Components of a 'hhh4' Fit by District Averaged Over Time
plotHHH4_season_groups	Plot Seasonality of a 'hhh4' Fit by Group
pop2011	Berlin and German Population by Age Group, 2011
popDE	Berlin and German Population by Age Group, 2011
powerC	Exponentiate a Matrix via Eigendecomposition
stationary	Stationary Distribution of a Transition Matrix
stratum	Extract Strata
stratum-method	Extract Strata
stsplothook	Hook functions for 'stsplot_time1'
stsplothook_highlight	Hook functions for 'stsplot_time1'