Epidemic/Network-Related Tools

Documentation for package ‘epinet’ version 2.1.11

BuildX	Build a dyadic covariate matrix (X)
epi2newick	Prints a transmission tree in Newick format.
epi2newickmcmc	Prints a transmission tree in Newick format.
epibayesmcmc	Uses epidemic data to perform Bayesian inference on a contact network
epinet	Uses epidemic data to perform Bayesian inference on a contact network
ess	Calculate the Effective Sample Size
HagellochDyadCov	Hagelloch measles data.
HagellochTimes	Hagelloch measles data.
MCMCcontrol	Set control parameters for epinet MCMC algorithm
plot.epidemic	Plot the spread of an epidemic
plot.epinet	Plot the spread of an epidemic
print.epidemic	Prints an epidemict object
print.epinet	Print basic information about an epinet object
priorcontrol	Set prior distributions and hyperparameters for epinet MCMC algorithm
SEIR.simulator	Simulate an epidemic on a contact network
SimulateDyadicLinearERGM	Simulates an ERGM network using given covariate values
summary.epidemic	Summarize simulated epidemic
summary.epinet	Summarize posterior samples from epinet object
write.epinet	Writes posterior samples from an epinet object to an output file