Analyze Data from Analysis of Behavior Experiments

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Documentation for package ‘YEAB’ version 1.0.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

ab_range_normalization	Normalization (or rescaling) between arbitrary a and b
balci2019	Peak individual trial analysis using moving average
berm	Biexponential Refractory Model (BERM)
berm_log_likelihood	Biexponential Refractory Model (BERM)
biexponential	Biexponential Model
biexponential_log_likelihood	Optimization Function for the Biexponential Model
bp_opt	Find the best fit for individual trials using 'optim'
ceiling_multiple	Find the nearest multiple
curv_index_fry	Curvature index using Fry derivation
curv_index_int	Curvature index by numerical integration
DD_data	Delay Discounting Data
dd_example	An example dataset of delays and normalized subjective values
entropy_kde2d	Shannon entropy in two dimensions
eq_hyp	Hyperbolic function
event_extractor	Event extractor
exhaustive_lhl	Individual trial analysis for peak procedure data
exhaustive_sbp	Single breakpoint algorithm, the exhaustive version as the one used in Guilhardi & Church 2004
exp_fit	Exponential fit with nls
fi60_raw_from_med	Raw Fixed Interval Data
fleshler_hoffman	Fleshler & Hoffman (1962) progression
fwhm	Full Width at Half Maximum
f_table	Frequency table for binned data
gaussian_fit	Gaussian + ramp fit with LM algorithm
gauss_example	Gaussian Example Data
gauss_example_1	Gaussian Example 1 Data
gauss_example_2	Gaussian Example 2 Data
gell_like	Gellerman-like series
get_bins	A function to binarize a numeric vector with a given resolution
hyperbolic_fit	Hyperbolic fit with nls
hyp_data	Simulated Data for Hyperbolic Discounting
hyp_data_list	Hypothetical dataset list for testing purposes
ind_trials_obj_fun	Objective function for finding the best fit for individual trials
ind_trials_opt	Find the best fit for individual trials using 'optim'
KL_div	Computes the Kullback-Leibler divergence based on kernel density estimates
map_onto	Biexponential Refractory Model (BERM)
mut_info_discrete	Mutual information of continuous variables using discretization
mut_info_knn	Mutual Information for Continuous Variables using kNN
n_between_intervals	Find maximum value within intervals
objective_bp	Objective function for the breakpoint optimization algorithm
optimize_berm	Biexponential Refractory Model (BERM)
optimize_biexponential	Optimization Function for the Biexponential Model
param_conver	Biexponential Refractory Model (BERM)
read_med	Process MED to csv based on standard data structure event.time
r_times	Reaction Times from Peak Procedure
sample_from_density	Sample from a density estimate
trapezoid_auc	Area under the curve (AUC)
unit_normalization	Min-max normalization (also feature rescaling)
val_in_interval	True value in interval