Operating on Integer-Bounded Intervals

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Documentation for package ‘IntervalSurgeon’ version 1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

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IntervalSurgeon-package	Operating on Integer-Bounded Intervals
annotate	Annotate one set of intervals with the names of those which intersect with the other
breaks	Get break points for set of intervals
covered	Determine whether each interval in a given set are intersected/covered by intervals in another set
depth	Depth of piled intervals
detached_sorted_nonempty	Check intervals are detached, sorted and non-empty.
flatten	Flatten a set of intervals
intersected	Determine whether each interval in a given set are intersected/covered by intervals in another set
intersects	Compute overlaps of two sets of detached and sorted intervals
IntervalSurgeon	Operating on Integer-Bounded Intervals
join	Get all overlapping tuples of intervals from multiple sets
overlaps	Compute overlaps of two sets of detached and sorted intervals
pile	Get IDs of intervals covering each sub-interval
proportion_overlap	Calculate proportion overlapping of intersecting intervals
sections	Get the sections from a set of interval breaks
setdiffs	Compute overlaps of two sets of detached and sorted intervals
stitch	Stich together touching intervals and remove empty intervals
unions	Compute overlaps of two sets of detached and sorted intervals