Bayesian Synthetic Likelihood

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Documentation for package ‘BSL’ version 3.2.5

• DESCRIPTION file.
• Package NEWS.

Help Pages

BSL-package	Bayesian synthetic likelihood
BSL	Bayesian synthetic likelihood
bsl	Performing BSL, uBSL, semiBSL and BSLmisspec
BSL-class	S4 class "BSL".
BSLclass	S4 class "BSL".
cell	Cell biology example
cell_prior	Cell biology example
cell_sim	Cell biology example
cell_sum	Cell biology example
combinePlotsBSL	Plot the densities of multiple "bsl" class objects.
cor2cov	Convert a correlation matrix to a covariance matrix
estimateLoglike	Estimate the synthetic likelihood
estimateWhiteningMatrix	Estimate the Whitening matrix to be used in the "wBSL" method of Priddle et al. (2021)
gaussianRankCorr	Gaussian rank correlation
gaussianSynLike	Estimate the Gaussian synthetic (log) likelihood
gaussianSynLikeGhuryeOlkin	Estimate the Gaussian synthetic (log) likelihood with an unbiased estimator
getGamma	Obtain the gamma samples (the latent parameters for BSLmisspec method) from a "BSL" object
getGamma-method	S4 class "BSL".
getLoglike	Obtain the log-likelihoods from a "BSL" object
getLoglike-method	S4 class "BSL".
getPenalty	Obtain the selected penalty values from a "PENALTY" object
getPenalty-method	S4 class "PENALTY"
getTheta	Obtain the samples from a "BSL" object
getTheta-method	S4 class "BSL".
ma2	An MA(2) model
ma2_prior	An MA(2) model
ma2_sim	An MA(2) model
ma2_sim_vec	An MA(2) model
ma2_sum	An MA(2) model
mgnk	The multivariate G&K example
mgnk_sim	The multivariate G&K example
mgnk_sum	The multivariate G&K example
MODEL	S4 class "MODEL"
MODEL-class	S4 class "MODEL"
newModel	S4 class "MODEL"
obsMat2deltax	Convert an observation matrix to a vector of n-day displacements
PENALTY	S4 class "PENALTY"
PENALTY-class	S4 class "PENALTY"
PENALTYclass	S4 class "PENALTY"
plot-method	S4 class "BSL".
plot-method	S4 class "PENALTY"
selectPenalty	Selecting the Penalty Parameter
semiparaKernelEstimate	Estimate the semi-parametric synthetic (log) likelihood
show-method	S4 class "BSL".
show-method	S4 class "PENALTY"
simulate_cell	Simulation function of the cell biology example
simulation	Run simulations with a give "MODEL" object
simulation-method	S4 class "MODEL"
sim_toad	The simulation function for the toad example
summary-method	S4 class "BSL".
summStat	Compute the summary statistics with the given data
summStat-method	S4 class "MODEL"
synLikeMisspec	Estimate the Gaussian synthetic (log) likelihood whilst acknowledging model incompatibility
toad	Toad example
toad_prior	Toad example
toad_sim	Toad example
toad_sum	Toad example