3D Volcano Plots and Polar Plots for Three-Class Data

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Documentation for package ‘volcano3D’ version 2.0.9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

add_animation	Add mode bar button to rotate the plot
boxplot_trio	Boxplot to compare groups
calc_pvals	Calculate one-way test and pairwise tests
calc_stats_2x3	Calculate p-values for 2x3-way analysis
deseq_2x3	2 x 3 factor DESeq2 analysis
deseq_2x3_polar	Convert 2x3 design DESeq2 objects to a volcano3d object
deseq_polar	Convert DESeq2 objects to a volcano3d object
forest_ggplot	Forest plot individual gene from 2x3 factor analysis
forest_plot	Forest plot individual gene from 2x3 factor analysis
forest_plotly	Forest plot individual gene from 2x3 factor analysis
grid-class	An S4 class to define the polar grid coordinates system.
polar_coords	Coordinates for Three Way Polar Plot
polar_coords_2x3	Coordinates for three way polar plot from 2x3 factor analysis
polar_grid	Grid required for 3D volcano plot and 2D radial plots
radial_ggplot	'Ggplot' for Three Way Polar Plot
radial_plotly	Three-way radial comparison Polar Plot (using plotly)
show_grid	Plots grid objects for inspection using plotly
significance_subset	Extract a subset population
syn_example_meta	PEAC synovial sample data
syn_example_rld	PEAC synovial gene expression data
volc3d-class	An S4 class to define the polar coordinates.
volcano3D	Three-Dimensional Volcano Plot
voom_polar	Convert RNA-Seq count data to a volcano3d object using 'limma voom'