Tools and Plots for Multi-Well Plates

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Documentation for package ‘platetools’ version 0.1.7

Help Pages

bhit_map Platemap to identify 'hits' following a B-score normalisation
b_grid Plots multiple b-scored normalised platemaps
b_map Plots a heatmap of b-score normalised values in a plate layout
b_score 2 way median polish
check_plate_input checks plate input for dodgy well plate combinations
dist_map Plots distributions per well in a plate layout
fill_plate Fill in missing wells
hit_grid Plots multiple platemaps with and identifies hits
hit_map Platemap to identify 'hits' in a screen
is_1536 internal 1536 plate function for plate_map
is_old_ggplot check ggplot2 version
legend_title change legend title
list_to_dataframe Converts list to a dataframe in a sensible way
med_smooth 2-way median smooth
missing_wells Returns wells that are missing from a complete plate
num_to_well Converts numbers to well labels
pchit_grid Plots multiple heatmaps identifying hits from the first principal component
pchit_map Plots a heatmap identifying hits from the first principal component
pc_grid Plots multiple platemaps as a heatmap of the first principal component.
pc_map Principal component heatmap in a plate layout
plate_effect Two way-median smooth on a plate map
plate_map creates dataframe of row,column,data from wellID and data
plate_map_grid creates dataframe of row, column, plate_id from data regarding wellIDs
plate_map_grid_scale creates dataframe of row, column, plate_id from data regarding wellIDs
plate_map_multiple row, column for multiple features
plate_map_scale creates dataframe of row, column, and scaled data from well IDs
plate_matrix plate layout matrix from well IDs
plt12 ggplot plate object
plt1536 ggplot plate object
plt24 ggplot plate object
plt384 ggplot plate object
plt48 ggplot plate object
plt6 ggplot plate object
plt96 ggplot plate object
raw_grid Plots multiple platemaps with heatmap of raw values
raw_map Plots a platemap with heatmap of raw values
readmap_data example data in a plate map form
read_map Annotates dataframe with metadata in a platemap matrix
rotate_plate rotates matrix by 180 degrees
set_block Set values in rectangular areas of a plate
well_to_num Converts well labels to numbers
z_grid Plots multiple platemaps with heatmap of scaled values
z_map Plots a platemap with heatmap of scaled values