Various Non-Additive Models for Genetic Associations

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Documentation for package ‘gnonadd’ version 1.0.3

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alpha.calc Genetic variance effects
alpha.cond Conditional analysis for genetic variance effects
alpha.continuous.cond variance effect conditioned on continuous variables
alpha.multi.est Variance parameters
corr.calibration Calibration for the correlation test
dominance.calc Genetic dominance effects
dominance_CC.calc Genetic dominance effects on a case control variable
ellipse.by.gen Ellipse best fit plot
env_interaction.calc Variant-Environmental interaction effects
env_interaction_CC.calc Variant-Environmental interaction effects on a case control variable
expected.variance.effect Expected variance effect from additive effect
hist_by_gen Histogram by genotype
interaction.calc Variant-Variant interaction effects
interaction_CC.calc Variant-Variant interaction effects on a case control variable
kappa_calc Genetic correlation effects
pairwise_env_int.calc Pairwise environmental interaction effects
pairwise_env_int_CC.calc Pairwise environmental interaction effects for a case control variable
pairwise_int.calc Pairwise interaction effects
pairwise_int_CC.calc Pairwise interaction effects for a case control variable
PRS_creator Creates poligenic risk scores
train_and_impute_PRS Trains and imputes a poligenic risk score (PRS)
var.adj Mean and variance effect adjustments.
Var.assoc Uncertanty association
var.summary Variance summary statistics
VarGS.plot Actual variance vs predicted variance plot
Viol.by.gen Violin plot by genotype