Genome-Wide Association Study with SLOPE

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Documentation for package ‘geneSLOPE’ version 0.38.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

clumpingResult	clumpingResult class
clump_snps	Clumping procedure for SLOPE
create_lambda	Lambda sequences for SLOPE
geneSLOPE	Genome-Wide Association Study with SLOPE
gui_geneSLOPE	GUI for GWAS with SLOPE
identify_clump	identify_clump
identify_clump.clumpingResult	Identify clump number in 'clumpingResult' class plot
identify_clump.selectionResult	Identify clump number in 'selectionResult' class plot
phenotypeData	phenotypeData class
plot.selectionResult	Plot selectionResult class object
print.clumpingResult	Print 'clumpingResult' class object
print.phenotypeData	Print phenotypeData class object
print.screeningResult	Print function for class screeningResult class
print.selectionResult	Print selectionResult class object
read_phenotype	Read phenotype from .fam file
screeningResult	screeningResult class
screen_snps	Reading and screening SNPs from .raw file and
selectionResult	selectionResult class
select_snps	GWAS with SLOPE
summary.clumpingResult	Summary clumpingResult class object
summary.phenotypeData	Summary phenotypeData class object
summary.screeningResult	Summary function for class screeningResult
summary.selectionResult	Summary selectionResult class object