Cumulative Percent Decay Curve Generator

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Documentation for package ‘cuperdec’ version 1.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

adaptive_burnin_filter	Calculate adaptive burn-in retain/discard list
calculate_curve	Calculate cumulative decay percent curve
cuperdec_database_ex	Example isolation source database input for cuperdec
cuperdec_metadata_ex	Example metadata file input for cuperdec
cuperdec_taxatable_ex	Example taxon table input for cuperdec
hard_burnin_filter	Calculate hard burn-in retain/discard list
load_database	Load database
load_map	Load metadata table
load_taxa_table	Load OTU table
plot_cuperdec	Plot cumulative percent decay curves
simple_filter	Apply simple percentage filter