Predict Cancer Subtypes Based on TCGA Data using Machine Learning Method

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Documentation for package ‘OncoSubtype’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

centroids_subtype	Predict the subtypes of selected cancer type based published papers
example_fpkm	example FPKM data
get_hvg	select highly variable genes from a expression matrix
get_median_centered	convert expression matrix to median-centered
get_rf_pred	Predict the subtypes of selected cancer type
hnsc_centroids	HNSC predictor centroids
load_dataset_from_github	Load Dataset from GitHub Repository
luad_centroids	LUAD predictor centroids
lusc_centroids	LUSC predictor centroids
ml_subtype	Predict the subtypes of selected cancer type using machine learning
PlotHeat	Plot heatmap of the train set or test set
SubtypeClass	Set the SubtypeClass
SubtypeClass-class	Set the SubtypeClass