| HaDeX-package | HaDeX |
| add_stat_dependency | Calculates confidence limits |
| calculate_confidence_limit_values | Calculate the value of confidence limit |
| calculate_kinetics | Calculate kinetic data |
| calculate_state_deuteration | Calculate deuteration |
| comparison_plot | Plot comparison plot |
| HaDeX | HaDeX |
| HaDeX_gui | HaDeX Graphical User Interface |
| plot_coverage | Plot peptide coverage |
| plot_kinetics | Plot kinetics data |
| plot_position_frequency | Plot position frequency |
| prepare_dataset | Calculate data |
| quality_control | Experiment quality control |
| read_hdx | Read HDX-MS data file |
| reconstruct_sequence | Reconstruct protein sequence |
| woods_plot | Plot Woods' plot |