Create Complex UpSet Plots Using 'ggplot2' Components
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Documentation for package ‘ComplexUpset’ version 1.3.3
Help Pages
| aes_percentage | Generate mapping for labeling percentages |
| arrange_venn | Arrange points for Venn diagram |
| compare_between_intersections | Compare covariates between intersections |
| create_upset_abc_example | Create an example dataset with three sets: A, B and C |
| geom_venn_circle | Circle for Venn diagram |
| geom_venn_label_region | Label for a region of Venn diagram |
| geom_venn_label_set | Label for a set of Venn diagram |
| geom_venn_region | Region of Venn diagram |
| get_size_mode | Retrieve symbol for given mode that can be used in aesthetics mapping with double bang (!!) |
| intersection_matrix | Prepare layers for sets sizes plot |
| intersection_ratio | Barplot annotation of relative intersections sizes |
| intersection_size | Barplot annotation of intersections sizes |
| reverse_log_trans | Logarithmic scale for use with 'upset_set_size()' |
| scale_color_venn_mix | Color scale for Venn diagram |
| scale_fill_venn_mix | Fill scale for Venn diagram |
| upset | Compose an UpSet plot |
| upset_annotate | Annotation panel shorthand |
| upset_data | Prepare data for UpSet plots |
| upset_default_themes | Default themes modified by specified arguments |
| upset_mode | Layer defining the intersection mode for the data to be displayed |
| upset_modify_themes | Default themes modified by specified component-specific arguments |
| upset_query | Highlight chosen sets or intersections |
| upset_set_size | Prepare layers for sets sizes plot |
| upset_stripes | Define appearence of the stripes |
| upset_test | Test for differences between intersections |
| upset_text_percentage | Generate percentage label of the intersection/union sizes ratio |
| upset_themes | List of default themes for upset components |