| PBD-package |
Protracted Birth-Death Model of Diversification |
| PBD |
Protracted Birth-Death Model of Diversification |
| pbd_bootstrap |
Bootstrap analysis under protracted birth-death model of diversification |
| pbd_brts_density |
Node depth probbaility density for protracted birth-death model of diversification |
| pbd_durspec_cumdensity |
Cumulative density of duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_density |
Probability density for duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_mean |
Mean duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_mode |
mode of the duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_moment |
Moments of duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_quantile |
Quantiles of duration of speciation under protracted birth-death model of diversification |
| pbd_durspec_var |
Variance in duration of speciation under protracted birth-death model of diversification |
| pbd_loglik |
Loglikelihood for protracted birth-death model of diversification |
| pbd_LR |
Bootstrap likelihood ratio test of protracted birth-death model of diversification |
| pbd_ML |
Maximization of loglikelihood under protracted birth-death model of diversification |
| pbd_sim |
Function to simulate the protracted speciation process |
| pbd_sim_cpp |
Function to simulate the approximate protracted speciation process |
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